Transferability of heterologous primers in Brycon falcatus

• Published in: Acta amazonica 2020-09, Vol.50 (3), p.232-238
• Main Authors: PENHA, Diego dos Santos, SOUZA, Felipe Pinheiro de, LIMA, Ed Christian Suzuki de, URREA-ROJAS, Angela Maria, PANDOLFI, Victor César Freitas, YAMACHITA, Andrei Lincoln, POVH, Jayme Aparecido, LEITE, Natalia Gonçalves, PEREIRA, Ulisses de Pádua, LOPERA-BARRERO, Nelson Mauricio
• Format: Article
• Language: English
• Subjects: Bryconidae; cross amplification; genetic conservation; genetic variability; SSR
• ISSN: 0044-5967; 1809-4392
• DOI: 10.1590/1809-4392201904191

ABSTRACT The genusBryconcomprises fish species of significant socioeconomic and biological importance in Brazil. Despite that, the genetic knowledge about these species is scarce, especially regardingBrycon falcatus. Thus, the objective of this study was to evaluate the transferability of heterologous microsatellite primers inB. falcatus for the first time. Heterologous primers obtained from B. opalinus, B. hilarii, B. insignis, B. orbignyanus, B. amazonicus, Prochilodus argenteus, Prochilodus lineatus, Piaractus mesopotamicus, and Colossoma macropomum were evaluated. The primers that showed the best amplification patterns were applied to a sample of 22 individuals and the genetic parameters were calculated. Nine primers displayed satisfactory cross-amplification withB. falcatus: BoM5 (Brycon opalinus); Bh8, Bh13 and Bh16 (B. hilarii); Borg59 (B. orbignyanus); Bag22 (B. amazonicus); Par12 and Par80 (P. argenteus), and Cm1A8 (C. macropomum). The genetic parameters (number of alleles, effective alleles, allele richness, and expected and observed heterozygosity) and the polymorphic information content (PIC) confirmed the viability of these primers for population genetics analyses. Our study demonstrates the potential of transferability of microsatellite markers from related species and even different genera to B. falcatus, providing usefull tools for future population genetic studies in this species. RESUMO O gênero Brycon compreende um grupo de espécies de peixes de grande importância socioeconômica e biológica no Brasil. Entretanto, o conhecimento genético dessas espécies é escasso, principalmente no caso do Brycon falcatus. Diante disso, objetivou-se verificar a transferibilidade de primers heterólogos em B. falcatus. Foram avaliados primers heterólogos provenientes das espécies B. opalinus, B. hilarii, B. insignis, B. orbignyanus, B. amazonicus, Prochilodus argenteus, Prochilodus lineatus, Piaractus mesopotamicus e Colossoma macropomum. Os primers que demonstraram melhores padrões de amplificação foram aplicados a uma amostra de 22 indivíduos e os parâmetros genéticos foram calculados. Nove primers apresentaram resultados satisfatórios de amplificação cruzada com B. falcatus: BoM5 (Brycon opalinus), Bh8, Bh13 e Bh16 (B. hilarii); Borg59 (Brycon orbignyanus); Bag22 (B. amazonicus); Par12 and Par80 (Prochilodus argenteus) e Cm1A8 (Colossoma macropomum). Os parâmetros genéticos (número de alelos, alelos efetivos, riqueza de alelos e heterozigosidade esperada