Loading…
Characterization of the microbial community response to replant diseases in peach orchards
This study attempted to monitor the development of microbial communities and reveal the correlation between the soil microbial community and soil nutrient factors over different years following the replanting of peach trees. The replanted soil (RS) and nonreplanted soil (NRS) were collected from pea...
Saved in:
Published in: | Journal of Integrative Agriculture 2023-04, Vol.22 (4), p.1082-1092 |
---|---|
Main Authors: | , , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites Items that cite this one |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | cdi_FETCH-LOGICAL-c440t-45e80ed7aadab74aed4ed0c379c5f8134bdeca581f72baaac7e0bb37973683dc3 |
---|---|
cites | cdi_FETCH-LOGICAL-c440t-45e80ed7aadab74aed4ed0c379c5f8134bdeca581f72baaac7e0bb37973683dc3 |
container_end_page | 1092 |
container_issue | 4 |
container_start_page | 1082 |
container_title | Journal of Integrative Agriculture |
container_volume | 22 |
creator | LI, Wei-hua CHEN, Peng WANG, Yu-zhu LIU, Qi-zhi |
description | This study attempted to monitor the development of microbial communities and reveal the correlation between the soil microbial community and soil nutrient factors over different years following the replanting of peach trees. The replanted soil (RS) and nonreplanted soil (NRS) were collected from peach orchards with different growth years (1, 3, 5, 7, 9, 11, and 13 years) in the same region. The soil bacterial and fungal community diversities were analyzed by high-throughput sequencing technology. Redundancy analysis (RDA) was used to show the correlation between the soil microbial community and environmental variables. The alpha diversities of the bacterial and fungal communities indicated that RS contained a higher abundance of bacterial and fungal operational taxonomic units (OTUs) than NRS. NMDS and ANOSIM analyses showed that the soil bacterial and fungal communities were significantly (P3.0). In addition, the soil nutrient contents were lower in RS than in NRS in the early stage (1–5 years), and the RDA showed that bacterial and fungal phyla are closely associated with environmental variables, including the potential of hydrogen (pH), ammonium nitrogen (AN), available phosphorus (AP) and available potassium (AK). These results lead to a deeper understanding of the microbial responses to replanting in peach orchards. |
doi_str_mv | 10.1016/j.jia.2022.08.121 |
format | article |
fullrecord | <record><control><sourceid>wanfang_jour_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_b730f1fa801a496ab48698ae01565b1f</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><wanfj_id>zgnykx_e202304011</wanfj_id><els_id>S209531192200199X</els_id><doaj_id>oai_doaj_org_article_b730f1fa801a496ab48698ae01565b1f</doaj_id><sourcerecordid>zgnykx_e202304011</sourcerecordid><originalsourceid>FETCH-LOGICAL-c440t-45e80ed7aadab74aed4ed0c379c5f8134bdeca581f72baaac7e0bb37973683dc3</originalsourceid><addsrcrecordid>eNp9UcFu1DAQjRBIVKUfwM3XHhLGsZ044oRWQCtV4gIXLtbEHu863bVXdgpsv75uF3HkNE8z896M3mua9xw6Dnz4sHRLwK6Hvu9Ad7znr5qLXqi-FbJXryuGSbWC8-ltc1XKAgBcKYBBXzQ_NzvMaFfK4RHXkCJLnq07Yodgc5oD7plNh8NDDOuJZSrHFAuxNVV83GNcmQuFsFBhIbIjod2xlG3VdOVd88bjvtDV33rZ_Pjy-fvmpr379vV28-mutVLC2kpFGsiNiA7nUSI5SQ6sGCervOZCzo4sKs392M-IaEeCea7jUQxaOCsum9uzrku4mGMOB8wnkzCYl0bKW4N5DXZPZh4FeO5RA0c5DThLPUwaqfoxqJn7qnV91vqN0WPcmiU95Fi_N4_beLr_Y6i6LEAC53WXn3erUaVk8v9uczDPuZjF1FzMcy4GtKm5VM7HM4eqIb8CZVNsoGjJhUx2rR-H_7CfAHjAlzs</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Characterization of the microbial community response to replant diseases in peach orchards</title><source>ScienceDirect Journals</source><creator>LI, Wei-hua ; CHEN, Peng ; WANG, Yu-zhu ; LIU, Qi-zhi</creator><creatorcontrib>LI, Wei-hua ; CHEN, Peng ; WANG, Yu-zhu ; LIU, Qi-zhi</creatorcontrib><description>This study attempted to monitor the development of microbial communities and reveal the correlation between the soil microbial community and soil nutrient factors over different years following the replanting of peach trees. The replanted soil (RS) and nonreplanted soil (NRS) were collected from peach orchards with different growth years (1, 3, 5, 7, 9, 11, and 13 years) in the same region. The soil bacterial and fungal community diversities were analyzed by high-throughput sequencing technology. Redundancy analysis (RDA) was used to show the correlation between the soil microbial community and environmental variables. The alpha diversities of the bacterial and fungal communities indicated that RS contained a higher abundance of bacterial and fungal operational taxonomic units (OTUs) than NRS. NMDS and ANOSIM analyses showed that the soil bacterial and fungal communities were significantly (P<0.01) affected by planting years, and that the main changes occurred in the first and ninth planting years. The presence of the bacterial orders Sphingobacteriales, Burkholderiales and Actinomycetales changed significantly after replanting. Some bacteria associated with bioremediation, such as Burkholderiales and Intrasporangiaceae, and some harmful pathogens, such as Penicillium and Ophiostomatales, significantly increased after replanting (LDA score>3.0). In addition, the soil nutrient contents were lower in RS than in NRS in the early stage (1–5 years), and the RDA showed that bacterial and fungal phyla are closely associated with environmental variables, including the potential of hydrogen (pH), ammonium nitrogen (AN), available phosphorus (AP) and available potassium (AK). These results lead to a deeper understanding of the microbial responses to replanting in peach orchards.</description><identifier>ISSN: 2095-3119</identifier><identifier>EISSN: 2352-3425</identifier><identifier>DOI: 10.1016/j.jia.2022.08.121</identifier><language>eng</language><publisher>Elsevier B.V</publisher><subject>complex syndrome ; environmental variables ; high-throughput sequencing ; microbial community ; replant disease</subject><ispartof>Journal of Integrative Agriculture, 2023-04, Vol.22 (4), p.1082-1092</ispartof><rights>2023 Chinese Academy of Agricultural Sciences</rights><rights>Copyright © Wanfang Data Co. Ltd. All Rights Reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c440t-45e80ed7aadab74aed4ed0c379c5f8134bdeca581f72baaac7e0bb37973683dc3</citedby><cites>FETCH-LOGICAL-c440t-45e80ed7aadab74aed4ed0c379c5f8134bdeca581f72baaac7e0bb37973683dc3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://www.wanfangdata.com.cn/images/PeriodicalImages/zgnykx-e/zgnykx-e.jpg</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>LI, Wei-hua</creatorcontrib><creatorcontrib>CHEN, Peng</creatorcontrib><creatorcontrib>WANG, Yu-zhu</creatorcontrib><creatorcontrib>LIU, Qi-zhi</creatorcontrib><title>Characterization of the microbial community response to replant diseases in peach orchards</title><title>Journal of Integrative Agriculture</title><description>This study attempted to monitor the development of microbial communities and reveal the correlation between the soil microbial community and soil nutrient factors over different years following the replanting of peach trees. The replanted soil (RS) and nonreplanted soil (NRS) were collected from peach orchards with different growth years (1, 3, 5, 7, 9, 11, and 13 years) in the same region. The soil bacterial and fungal community diversities were analyzed by high-throughput sequencing technology. Redundancy analysis (RDA) was used to show the correlation between the soil microbial community and environmental variables. The alpha diversities of the bacterial and fungal communities indicated that RS contained a higher abundance of bacterial and fungal operational taxonomic units (OTUs) than NRS. NMDS and ANOSIM analyses showed that the soil bacterial and fungal communities were significantly (P<0.01) affected by planting years, and that the main changes occurred in the first and ninth planting years. The presence of the bacterial orders Sphingobacteriales, Burkholderiales and Actinomycetales changed significantly after replanting. Some bacteria associated with bioremediation, such as Burkholderiales and Intrasporangiaceae, and some harmful pathogens, such as Penicillium and Ophiostomatales, significantly increased after replanting (LDA score>3.0). In addition, the soil nutrient contents were lower in RS than in NRS in the early stage (1–5 years), and the RDA showed that bacterial and fungal phyla are closely associated with environmental variables, including the potential of hydrogen (pH), ammonium nitrogen (AN), available phosphorus (AP) and available potassium (AK). These results lead to a deeper understanding of the microbial responses to replanting in peach orchards.</description><subject>complex syndrome</subject><subject>environmental variables</subject><subject>high-throughput sequencing</subject><subject>microbial community</subject><subject>replant disease</subject><issn>2095-3119</issn><issn>2352-3425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNp9UcFu1DAQjRBIVKUfwM3XHhLGsZ044oRWQCtV4gIXLtbEHu863bVXdgpsv75uF3HkNE8z896M3mua9xw6Dnz4sHRLwK6Hvu9Ad7znr5qLXqi-FbJXryuGSbWC8-ltc1XKAgBcKYBBXzQ_NzvMaFfK4RHXkCJLnq07Yodgc5oD7plNh8NDDOuJZSrHFAuxNVV83GNcmQuFsFBhIbIjod2xlG3VdOVd88bjvtDV33rZ_Pjy-fvmpr379vV28-mutVLC2kpFGsiNiA7nUSI5SQ6sGCervOZCzo4sKs392M-IaEeCea7jUQxaOCsum9uzrku4mGMOB8wnkzCYl0bKW4N5DXZPZh4FeO5RA0c5DThLPUwaqfoxqJn7qnV91vqN0WPcmiU95Fi_N4_beLr_Y6i6LEAC53WXn3erUaVk8v9uczDPuZjF1FzMcy4GtKm5VM7HM4eqIb8CZVNsoGjJhUx2rR-H_7CfAHjAlzs</recordid><startdate>20230401</startdate><enddate>20230401</enddate><creator>LI, Wei-hua</creator><creator>CHEN, Peng</creator><creator>WANG, Yu-zhu</creator><creator>LIU, Qi-zhi</creator><general>Elsevier B.V</general><general>Laboratory of Entomology and Nematology,College of Plant Protection,China Agricultural University,Beijing 100193,P.R.China</general><general>State Key Laboratory of Integrated Management of Pest Insects and Rodents,Institute of Zoology,Chinese Academy of Sciences,Beijing 100101,P.R.China%Laboratory of Entomology and Nematology,College of Plant Protection,China Agricultural University,Beijing 100193,P.R.China</general><general>Key Laboratory of Natural Enemies Insects of Ministry of Agriculture and Rural Affairs,Shandong Provincial Engineering Technology Research Center on Biocontrol of Crop Diseases and Insect Pest,Institute of Plant Protection,Shandong Academy of Agricultural Sciences,Jinan 250100,P.R.China%Institute of Forestry and Pomology,Beijing Academy of Agriculture and Forestry Sciences,Beijing 100093,P.R.China%Laboratory of Entomology and Nematology,College of Plant Protection,China Agricultural University,Beijing 100193,P.R.China</general><general>Elsevier</general><scope>6I.</scope><scope>AAFTH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>2B.</scope><scope>4A8</scope><scope>92I</scope><scope>93N</scope><scope>PSX</scope><scope>TCJ</scope><scope>DOA</scope></search><sort><creationdate>20230401</creationdate><title>Characterization of the microbial community response to replant diseases in peach orchards</title><author>LI, Wei-hua ; CHEN, Peng ; WANG, Yu-zhu ; LIU, Qi-zhi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c440t-45e80ed7aadab74aed4ed0c379c5f8134bdeca581f72baaac7e0bb37973683dc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>complex syndrome</topic><topic>environmental variables</topic><topic>high-throughput sequencing</topic><topic>microbial community</topic><topic>replant disease</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>LI, Wei-hua</creatorcontrib><creatorcontrib>CHEN, Peng</creatorcontrib><creatorcontrib>WANG, Yu-zhu</creatorcontrib><creatorcontrib>LIU, Qi-zhi</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>CrossRef</collection><collection>Wanfang Data Journals - Hong Kong</collection><collection>WANFANG Data Centre</collection><collection>Wanfang Data Journals</collection><collection>万方数据期刊 - 香港版</collection><collection>China Online Journals (COJ)</collection><collection>China Online Journals (COJ)</collection><collection>Directory of Open Access Journals</collection><jtitle>Journal of Integrative Agriculture</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>LI, Wei-hua</au><au>CHEN, Peng</au><au>WANG, Yu-zhu</au><au>LIU, Qi-zhi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of the microbial community response to replant diseases in peach orchards</atitle><jtitle>Journal of Integrative Agriculture</jtitle><date>2023-04-01</date><risdate>2023</risdate><volume>22</volume><issue>4</issue><spage>1082</spage><epage>1092</epage><pages>1082-1092</pages><issn>2095-3119</issn><eissn>2352-3425</eissn><abstract>This study attempted to monitor the development of microbial communities and reveal the correlation between the soil microbial community and soil nutrient factors over different years following the replanting of peach trees. The replanted soil (RS) and nonreplanted soil (NRS) were collected from peach orchards with different growth years (1, 3, 5, 7, 9, 11, and 13 years) in the same region. The soil bacterial and fungal community diversities were analyzed by high-throughput sequencing technology. Redundancy analysis (RDA) was used to show the correlation between the soil microbial community and environmental variables. The alpha diversities of the bacterial and fungal communities indicated that RS contained a higher abundance of bacterial and fungal operational taxonomic units (OTUs) than NRS. NMDS and ANOSIM analyses showed that the soil bacterial and fungal communities were significantly (P<0.01) affected by planting years, and that the main changes occurred in the first and ninth planting years. The presence of the bacterial orders Sphingobacteriales, Burkholderiales and Actinomycetales changed significantly after replanting. Some bacteria associated with bioremediation, such as Burkholderiales and Intrasporangiaceae, and some harmful pathogens, such as Penicillium and Ophiostomatales, significantly increased after replanting (LDA score>3.0). In addition, the soil nutrient contents were lower in RS than in NRS in the early stage (1–5 years), and the RDA showed that bacterial and fungal phyla are closely associated with environmental variables, including the potential of hydrogen (pH), ammonium nitrogen (AN), available phosphorus (AP) and available potassium (AK). These results lead to a deeper understanding of the microbial responses to replanting in peach orchards.</abstract><pub>Elsevier B.V</pub><doi>10.1016/j.jia.2022.08.121</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2095-3119 |
ispartof | Journal of Integrative Agriculture, 2023-04, Vol.22 (4), p.1082-1092 |
issn | 2095-3119 2352-3425 |
language | eng |
recordid | cdi_doaj_primary_oai_doaj_org_article_b730f1fa801a496ab48698ae01565b1f |
source | ScienceDirect Journals |
subjects | complex syndrome environmental variables high-throughput sequencing microbial community replant disease |
title | Characterization of the microbial community response to replant diseases in peach orchards |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T15%3A04%3A50IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-wanfang_jour_doaj_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Characterization%20of%20the%20microbial%20community%20response%20to%20replant%20diseases%20in%20peach%20orchards&rft.jtitle=Journal%20of%20Integrative%20Agriculture&rft.au=LI,%20Wei-hua&rft.date=2023-04-01&rft.volume=22&rft.issue=4&rft.spage=1082&rft.epage=1092&rft.pages=1082-1092&rft.issn=2095-3119&rft.eissn=2352-3425&rft_id=info:doi/10.1016/j.jia.2022.08.121&rft_dat=%3Cwanfang_jour_doaj_%3Ezgnykx_e202304011%3C/wanfang_jour_doaj_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c440t-45e80ed7aadab74aed4ed0c379c5f8134bdeca581f72baaac7e0bb37973683dc3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_id=info:pmid/&rft_wanfj_id=zgnykx_e202304011&rfr_iscdi=true |