Surveillance and phylogenetic analysis of a pathogenic bacterium candidate in nasal discharge from children

• Published in: Microbiology spectrum 2024-07, Vol.12 (7), p.e0056624
• Main Authors: Fukuda, Kazumasa, Haro, Kaoru, Yamasaki, Kei, Ikegami, Hiroaki, Saito, Mitsumasa
• Format: Article
• Language: English
• Subjects: 16S rRNA gene; Adolescent; Bacteria - classification; Bacteria - genetics; Bacteria - isolation & purification; Bacteriology; Bronchoalveolar Lavage Fluid - microbiology; Child; Child, Preschool; Female; Humans; Infant; infectious disease; Japan; Male; Phylogeny; Research Article; Respiratory Tract Infections - microbiology; RNA, Ribosomal, 16S - genetics; uncultured bacterium
• ISSN: 2165-0497; 2165-0497
• DOI: 10.1128/spectrum.00566-24

"The infectious organism lurking in human airways (IOLA)" is a candidate pathogenic bacterium detected in bronchoalveolar lavage fluid specimens derived from adult patients with chronic lower respiratory tract infections. Genomic analyses of IOLA have revealed that it possesses the smallest and most AT-rich genome among human-derived bacteria. However, its biological properties remain unclear because no culture method has been established for IOLA. Here, we conducted a large-scale IOLA surveillance study of nasal discharge specimens from children in Japan and investigated the correlation between IOLA detection frequency and patient characteristics. We detected IOLA in 5.4% (103 of 1,920) of pediatric nasal discharge samples. No significant differences were observed in the frequency of detection based on the patient's background. However, with respect to age, the frequency of detection tended to be significantly high at 2-3 and 6 years old. Phylogenetic analysis revealed five phylotypes in the IOLA 16S rRNA gene sequences, and the sequences detected in adult patients with respiratory infections in a previous study belonged to one of the five phylotypes. The involvement of IOLA in the symptoms is not clear, but IOLA is detected at a relatively high frequency in pediatric nasal discharge. Many subjects with detected IOLA were not always IOLA positive, and IOLA was detected transiently. Our findings suggest that IOLA is horizontally transmitted through groups in nursery and elementary schools, and there are differences in biological characteristics among the IOLA phylotypes.IMPORTANCE"The infectious organism lurking in human airways (IOLA)" is a candidate pathogenic bacterium strongly suspected to be infectious to the respiratory tracts of humans and animals. However, a culture method for IOLA has not been established yet, and its properties remain unclear. In this study, IOLA was detected at a relatively high frequency in the nasal discharge of children, and five phylotypes of IOLA were identified. One of these phylotypes was found in the bronchoalveolar lavage fluid from adult patients, suggesting lineage-specific differences in the pathogenicity of IOLA. Moreover, it was suggested that IOLA is horizontally transmitted when children gather in groups such as nursery and elementary schools. These findings strongly indicate that IOLAs have been clinically undetected so far but are spreading among children, with one lineage being involved in respiratory diseases