Genomic Insights into Omega-3 Polyunsaturated Fatty Acid Producing Shewanella sp. N2AIL from Fish Gut

• Published in: Biology (Basel, Switzerland) Switzerland), 2022-04, Vol.11 (5), p.632
• Main Authors: Chaudhary, Anchal, Ketkar, Omkar Avinash, Irfan, Sayed, Rana, Varnika, Rahi, Praveen, Deshmukh, Rupesh, Kaur, Jagdeep, Dhar, Hena
• Format: Article
• Language: English
• Subjects: Annotations; Antibiotic resistance; Antibiotics; Aquatic environment; Bioelectricity; Bioremediation; Biosynthesis; Contaminants; Deoxyribonucleic acid; Digestive system; DNA; Eicosapentaenoic acid; Fatty acids; Food; Gastrointestinal tract; Genes; genome sequencing; Genomes; Genomic analysis; Hybridization; Maximum likelihood method; Metabolites; Nucleotide sequence; Oreochromis; Phylogenetics; Phylogeny; Pollutants; Polyunsaturated fatty acids; Proteins; Salinity; secondary metabolites; Shewanella; stress resistance; Transfer RNA
• ISSN: 2079-7737; 2079-7737
• DOI: 10.3390/biology11050632

The genus is widely distributed in niches ranging from an aquatic environment to spoiled fish and is loaded with various ecologically and commercially important metabolites. Bacterial species under this genus find application in bioelectricity generation and bioremediation due to their capability to use pollutants as the terminal electron acceptor and could produce health-beneficial omega-3 fatty acids, particularly eicosapentaenoic acid (EPA). Here, the genome sequence of an EPA-producing bacterium, sp. N2AIL, isolated from the gastrointestinal tract of Tilapia fish, is reported. The genome size of the strain was 4.8 Mb with a GC content of 46.3% containing 4385 protein-coding genes. Taxonogenomic analysis assigned this strain to the genus on the basis of average nucleotide identity (ANI) and in silico DNA-DNA hybridization (DDH), phylogenetically most closely related with . NCTC 10735 . The comparative genome analysis with the type strain of . revealed 693 unique genes in the strain N2AIL, highlighting the variation at the strain level. The genes associated with stress adaptation, secondary metabolite production, antibiotic resistance, and metal reduction were identified in the genome suggesting the potential of the bacterium to be explored as an industrially important strain. PUFA synthase gene cluster of size ~20.5 kb comprising all the essential domains for EPA biosynthesis arranged in five ORFs was also identified in the strain N2AIL. The study provides genomic insights into the diverse genes of sp. N2AIL, which is particularly involved in adaptation strategies and prospecting secondary metabolite potential, specifically the biosynthesis of omega-3 polyunsaturated fatty acids.