Barley Seeds miRNome Stability during Long-Term Storage and Aging

• Published in: International journal of molecular sciences 2021-04, Vol.22 (9), p.4315
• Main Authors: Puchta, Marta, Groszyk, Jolanta, Małecka, Magdalena, Koter, Marek D, Niedzielski, Maciej, Rakoczy-Trojanowska, Monika, Boczkowska, Maja
• Format: Article
• Language: English
• Subjects: Aging; Barley; Biological activity; Flowers & plants; Food Storage; Gene expression; Gene Expression Regulation, Plant; Genomes; High-Throughput Nucleotide Sequencing; Hordeum - genetics; long-term storage; MicroRNAs; MicroRNAs - genetics; miRNA; next generation sequencing; RNA, Plant - genetics; seed aging; Seeds; Seeds - genetics; Senescence; Sequence Analysis, RNA; Shelf life; Signal transduction; Time; Viability
• ISSN: 1422-0067; 1661-6596; 1422-0067
• DOI: 10.3390/ijms22094315

Seed aging is a complex biological process that has been attracting scientists' attention for many years. High-throughput small RNA sequencing was applied to examine microRNAs contribution in barley seeds senescence. Unique samples of seeds that, despite having the same genetic makeup, differed in viability after over 45 years of storage in a dry state were investigated. In total, 61 known and 81 novel miRNA were identified in dry seeds. The highest level of expression was found in four conserved miRNA families, i.e., miR159, miR156, miR166, and miR168. However, the most astonishing result was the lack of significant differences in the level of almost all miRNAs in seed samples with significantly different viability. This result reveals that miRNAs in dry seeds are extremely stable. This is also the first identified RNA fraction that is not deteriorating along with the loss of seed viability. Moreover, the novel miRNA hvu-new41, with higher expression in seeds with the lowest viability as detected by RT-qPCR, has the potential to become an indicator of the decreasing viability of seeds during storage in a dry state.