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Epidemiological and Molecular Characterization of Blastocystis Infection in Children Attending Daycare Centers in Medellín, Colombia
Background: The present study aims to perform an epidemiological and molecular characterization of Blastocystis infection in a child population attending daycare centers of Medellín, Colombia. Methods: A total of 265 children aged 0–5 years were enrolled in five children’s centers in urban sectors o...
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Published in: | Biology (Basel, Switzerland) Switzerland), 2021-07, Vol.10 (7), p.669 |
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description | Background: The present study aims to perform an epidemiological and molecular characterization of Blastocystis infection in a child population attending daycare centers of Medellín, Colombia. Methods: A total of 265 children aged 0–5 years were enrolled in five children’s centers in urban sectors of Medellín, northwestern Colombia. Stool samples were taken to identify intestinal parasites by direct examination, Ritchie–Frick concentration, and molecular identification of Blastocystis by conventional PCR and subtype (ST) identification by PCR barcoding with subsequent phylogenetic reconstruction. Kappa index was calculated to evaluate the agreement between microscopy and PCR for the diagnosis of Blastocystis. Results: The prevalence of intestinal protozoa was 36.6% (97/265), with Blastocystis as the most frequent parasitic protozoan at 15.8% (42/265), followed by Giardia intestinalis at 15.5% (41/265) and Endolimax nana at 15.1% (40/265). The prevalence of Blastocystis by PCR was 53.2% (141/265), the subtypes identified were ST3 at 30.5% (18/59), ST2 at 23.7% (14/59), ST1 at 20.3% (12/59), and with less frequency, ST4 at 5.1% (3/59), ST6 at 1.7% (1/59) and ST16 at 15.3% (9/59) allele 162. Conclusion: This study provides the first genetic characterization of Blastocystis subtypes circulating in a population of Medellín, Colombia, and also updates the epidemiology of Blastocystis subtypes in the world with the first identification of ST16 in humans. |
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Methods: A total of 265 children aged 0–5 years were enrolled in five children’s centers in urban sectors of Medellín, northwestern Colombia. Stool samples were taken to identify intestinal parasites by direct examination, Ritchie–Frick concentration, and molecular identification of Blastocystis by conventional PCR and subtype (ST) identification by PCR barcoding with subsequent phylogenetic reconstruction. Kappa index was calculated to evaluate the agreement between microscopy and PCR for the diagnosis of Blastocystis. Results: The prevalence of intestinal protozoa was 36.6% (97/265), with Blastocystis as the most frequent parasitic protozoan at 15.8% (42/265), followed by Giardia intestinalis at 15.5% (41/265) and Endolimax nana at 15.1% (40/265). The prevalence of Blastocystis by PCR was 53.2% (141/265), the subtypes identified were ST3 at 30.5% (18/59), ST2 at 23.7% (14/59), ST1 at 20.3% (12/59), and with less frequency, ST4 at 5.1% (3/59), ST6 at 1.7% (1/59) and ST16 at 15.3% (9/59) allele 162. Conclusion: This study provides the first genetic characterization of Blastocystis subtypes circulating in a population of Medellín, Colombia, and also updates the epidemiology of Blastocystis subtypes in the world with the first identification of ST16 in humans.</description><identifier>ISSN: 2079-7737</identifier><identifier>EISSN: 2079-7737</identifier><identifier>DOI: 10.3390/biology10070669</identifier><identifier>PMID: 34356524</identifier><language>eng</language><publisher>Basel: MDPI AG</publisher><subject>Alleles ; Blastocystis ; Children ; Daycare ; Developing countries ; Diagnosis ; Displaced persons ; Epidemiology ; Genetic diversity ; Hygiene ; Intestinal parasites ; Intestine ; LDCs ; Microscopy ; Parasites ; Phylogenetics ; Phylogeny ; Population genetics ; Protozoa ; Reptiles & amphibians ; Sociodemographics ; subtypes</subject><ispartof>Biology (Basel, Switzerland), 2021-07, Vol.10 (7), p.669</ispartof><rights>2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 by the authors. 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c464t-7a0b86ddb8cea60bbb6959588c137962c9bbb74b945684784b6cb3a4da0b33613</citedby><cites>FETCH-LOGICAL-c464t-7a0b86ddb8cea60bbb6959588c137962c9bbb74b945684784b6cb3a4da0b33613</cites><orcidid>0000-0002-1344-9312</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2554428784/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2554428784?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids></links><search><creatorcontrib>Osorio-Pulgarin, Maria I.</creatorcontrib><creatorcontrib>Higuera, Adriana</creatorcontrib><creatorcontrib>Beltran-Álzate, Juan C.</creatorcontrib><creatorcontrib>Sánchez-Jiménez, Miryan</creatorcontrib><creatorcontrib>Ramírez, Juan David</creatorcontrib><title>Epidemiological and Molecular Characterization of Blastocystis Infection in Children Attending Daycare Centers in Medellín, Colombia</title><title>Biology (Basel, Switzerland)</title><description>Background: The present study aims to perform an epidemiological and molecular characterization of Blastocystis infection in a child population attending daycare centers of Medellín, Colombia. Methods: A total of 265 children aged 0–5 years were enrolled in five children’s centers in urban sectors of Medellín, northwestern Colombia. Stool samples were taken to identify intestinal parasites by direct examination, Ritchie–Frick concentration, and molecular identification of Blastocystis by conventional PCR and subtype (ST) identification by PCR barcoding with subsequent phylogenetic reconstruction. Kappa index was calculated to evaluate the agreement between microscopy and PCR for the diagnosis of Blastocystis. Results: The prevalence of intestinal protozoa was 36.6% (97/265), with Blastocystis as the most frequent parasitic protozoan at 15.8% (42/265), followed by Giardia intestinalis at 15.5% (41/265) and Endolimax nana at 15.1% (40/265). The prevalence of Blastocystis by PCR was 53.2% (141/265), the subtypes identified were ST3 at 30.5% (18/59), ST2 at 23.7% (14/59), ST1 at 20.3% (12/59), and with less frequency, ST4 at 5.1% (3/59), ST6 at 1.7% (1/59) and ST16 at 15.3% (9/59) allele 162. Conclusion: This study provides the first genetic characterization of Blastocystis subtypes circulating in a population of Medellín, Colombia, and also updates the epidemiology of Blastocystis subtypes in the world with the first identification of ST16 in humans.</description><subject>Alleles</subject><subject>Blastocystis</subject><subject>Children</subject><subject>Daycare</subject><subject>Developing countries</subject><subject>Diagnosis</subject><subject>Displaced persons</subject><subject>Epidemiology</subject><subject>Genetic diversity</subject><subject>Hygiene</subject><subject>Intestinal parasites</subject><subject>Intestine</subject><subject>LDCs</subject><subject>Microscopy</subject><subject>Parasites</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Population genetics</subject><subject>Protozoa</subject><subject>Reptiles & amphibians</subject><subject>Sociodemographics</subject><subject>subtypes</subject><issn>2079-7737</issn><issn>2079-7737</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdks1uEzEQgFcIRKvSM1dLXDiQ1rv2-ueCVJZSIrXiAmdr_LOpI68d7A1SuPM4PAUvhpNUiPZka-bzN57RNM3rFl8QIvGl9imk1a7FmGPG5LPmtMNcLjgn_Pl_95PmvJQ1xnusY4S9bE4IJT3rO3ra_LreeOumg8kbCAiiRXcpOLMNkNFwDxnM7LL_CbNPEaURfQhQ5mR2ZfYFLePozCHjY6V9sNlFdDXPLlofV-gj7AxkhwYXq6XsqTtnXQh_fsd3aKhlJ-3hVfNihFDc-cN51nz7dP11-Ly4_XKzHK5uF4YyOi84YC2YtVoYBwxrrZnsZS-EaQmXrDOyhjjVkvZMUC6oZkYToLa-I4S15KxZHr02wVptsp8g71QCrw6BlFcK8uxNcMoIJgXFIwZXixOjW1MnqjtqNGWm59X1_ujabPXkrKkNZgiPpI8z0d-rVfqhBMEtpbQK3j4Icvq-dWVWky-mjgaiS9uiur6XlHQdlxV98wRdp22OdVR7itJO1GYrdXmkTE6lZDf--0yL1X5j1JONIX8B5aW2oA</recordid><startdate>20210716</startdate><enddate>20210716</enddate><creator>Osorio-Pulgarin, Maria I.</creator><creator>Higuera, Adriana</creator><creator>Beltran-Álzate, Juan C.</creator><creator>Sánchez-Jiménez, Miryan</creator><creator>Ramírez, Juan David</creator><general>MDPI AG</general><general>MDPI</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QP</scope><scope>7TK</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-1344-9312</orcidid></search><sort><creationdate>20210716</creationdate><title>Epidemiological and Molecular Characterization of Blastocystis Infection in Children Attending Daycare Centers in Medellín, Colombia</title><author>Osorio-Pulgarin, Maria I. ; Higuera, Adriana ; Beltran-Álzate, Juan C. ; Sánchez-Jiménez, Miryan ; Ramírez, Juan David</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c464t-7a0b86ddb8cea60bbb6959588c137962c9bbb74b945684784b6cb3a4da0b33613</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Alleles</topic><topic>Blastocystis</topic><topic>Children</topic><topic>Daycare</topic><topic>Developing countries</topic><topic>Diagnosis</topic><topic>Displaced persons</topic><topic>Epidemiology</topic><topic>Genetic diversity</topic><topic>Hygiene</topic><topic>Intestinal parasites</topic><topic>Intestine</topic><topic>LDCs</topic><topic>Microscopy</topic><topic>Parasites</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Population genetics</topic><topic>Protozoa</topic><topic>Reptiles & amphibians</topic><topic>Sociodemographics</topic><topic>subtypes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Osorio-Pulgarin, Maria I.</creatorcontrib><creatorcontrib>Higuera, Adriana</creatorcontrib><creatorcontrib>Beltran-Álzate, Juan C.</creatorcontrib><creatorcontrib>Sánchez-Jiménez, Miryan</creatorcontrib><creatorcontrib>Ramírez, Juan David</creatorcontrib><collection>CrossRef</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>Biological Sciences</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>Biology (Basel, Switzerland)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Osorio-Pulgarin, Maria I.</au><au>Higuera, Adriana</au><au>Beltran-Álzate, Juan C.</au><au>Sánchez-Jiménez, Miryan</au><au>Ramírez, Juan David</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Epidemiological and Molecular Characterization of Blastocystis Infection in Children Attending Daycare Centers in Medellín, Colombia</atitle><jtitle>Biology (Basel, Switzerland)</jtitle><date>2021-07-16</date><risdate>2021</risdate><volume>10</volume><issue>7</issue><spage>669</spage><pages>669-</pages><issn>2079-7737</issn><eissn>2079-7737</eissn><abstract>Background: The present study aims to perform an epidemiological and molecular characterization of Blastocystis infection in a child population attending daycare centers of Medellín, Colombia. Methods: A total of 265 children aged 0–5 years were enrolled in five children’s centers in urban sectors of Medellín, northwestern Colombia. Stool samples were taken to identify intestinal parasites by direct examination, Ritchie–Frick concentration, and molecular identification of Blastocystis by conventional PCR and subtype (ST) identification by PCR barcoding with subsequent phylogenetic reconstruction. Kappa index was calculated to evaluate the agreement between microscopy and PCR for the diagnosis of Blastocystis. Results: The prevalence of intestinal protozoa was 36.6% (97/265), with Blastocystis as the most frequent parasitic protozoan at 15.8% (42/265), followed by Giardia intestinalis at 15.5% (41/265) and Endolimax nana at 15.1% (40/265). The prevalence of Blastocystis by PCR was 53.2% (141/265), the subtypes identified were ST3 at 30.5% (18/59), ST2 at 23.7% (14/59), ST1 at 20.3% (12/59), and with less frequency, ST4 at 5.1% (3/59), ST6 at 1.7% (1/59) and ST16 at 15.3% (9/59) allele 162. Conclusion: This study provides the first genetic characterization of Blastocystis subtypes circulating in a population of Medellín, Colombia, and also updates the epidemiology of Blastocystis subtypes in the world with the first identification of ST16 in humans.</abstract><cop>Basel</cop><pub>MDPI AG</pub><pmid>34356524</pmid><doi>10.3390/biology10070669</doi><orcidid>https://orcid.org/0000-0002-1344-9312</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Alleles Blastocystis Children Daycare Developing countries Diagnosis Displaced persons Epidemiology Genetic diversity Hygiene Intestinal parasites Intestine LDCs Microscopy Parasites Phylogenetics Phylogeny Population genetics Protozoa Reptiles & amphibians Sociodemographics subtypes |
title | Epidemiological and Molecular Characterization of Blastocystis Infection in Children Attending Daycare Centers in Medellín, Colombia |
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