Identification of Target Gene and Interacting Protein of Two LaSCL6 Alternative Splicing Variants Provides Novel Insights into Larch Somatic Embryogenesis

Somatic embryogenesis is valuable for clonal propagation and genetic improvement, and it also serves as an ideal system for studying plant development mechanisms. In , microRNA171 and its target gene ( ), which has two alternative splicing variants, can regulate somatic embryogenesis; however, the u...

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Published in:Plants (Basel) 2024-10, Vol.13 (21), p.3072
Main Authors: Zang, Qiao-Lu, Ye, Zha-Long, Qi, Li-Wang, Li, Wan-Feng
Format: Article
Language:English
Subjects:
Alternative splicing
Arabidopsis thaliana
Biological activity
Cytochrome P450
Cytochromes P450
Embryonic development
Embryonic growth stage
Gene expression
Genes
Genetic engineering
Genetic transcription
Glycosyltransferase
Japanese larch
Kinases
Larix kaempferi
LaSCL6
miR171
miRNA
Molecular modelling
Oryza sativa
Polypeptides
Propagation
Proteins
regulatory network
RNA
RNA sequencing
Somatic embryogenesis
Target recognition
Transcription factors
Yeasts
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Summary:Somatic embryogenesis is valuable for clonal propagation and genetic improvement, and it also serves as an ideal system for studying plant development mechanisms. In , microRNA171 and its target gene ( ), which has two alternative splicing variants, can regulate somatic embryogenesis; however, the underlying molecular mechanism is still unknown. In this study, we overexpressed these two variants in and and then used the RNA-Seq method to screen genes from and , whose expression patterns are related to those of variants. The screened genes were then used to search proteins to identify the candidate target genes of . After yeast one-hybrid and dual- luciferase transcriptional activity assays, , , , ( ), and ( ) were confirmed to be the target genes of ; in addition, and ( ) were confirmed to be the target genes of LaSCL6-var2. Moreover, APETALA2-like protein 2, a transcription factor from the AP2/ERF family, was shown to interact with LaSCL6-var1 and LaSCL6-var2. Taken together, our results suggest a regulatory network of miR171- . The findings presented here not only provide novel insights into the regulation of the miR171- module but also explain the mechanism underlying larch somatic embryogenesis and other biological processes.
ISSN:2223-7747
2223-7747
DOI:10.3390/plants13213072