Forces Driving a Magic Bullet to Its Target: Revisiting the Role of Thermodynamics in Drug Design, Development, and Optimization

• Published in: Life (Basel, Switzerland) Switzerland), 2022-09, Vol.12 (9), p.1438
• Main Authors: Minetti, Conceição A, Remeta, David P
• Format: Article
• Language: English
• Subjects: Binding; Calorimetry; Cancer; Cardiovascular diseases; Design optimization; Drug development; Drug discovery; drug-target interactions; Effectiveness; fragment-based drug discovery; Health risks; isothermal titration calorimetry; Lead compounds; lead optimization; Ligands; Neurodegeneration; Optimization; Pandemics; Projectiles; Proteins; R&D; Research & development; Review; Selectivity; Severe acute respiratory syndrome coronavirus 2; Signatures; Structure-function relationships; thermodynamic binding signatures; Thermodynamics; Titration; Titration calorimetry; Trends; Viral diseases
• ISSN: 2075-1729; 2075-1729
• DOI: 10.3390/life12091438

Drug discovery strategies have advanced significantly towards prioritizing target selectivity to achieve the longstanding goal of identifying "magic bullets" amongst thousands of chemical molecules screened for therapeutic efficacy. A myriad of emerging and existing health threats, including the SARS-CoV-2 pandemic, alarming increase in bacterial resistance, and potentially fatal chronic ailments, such as cancer, cardiovascular disease, and neurodegeneration, have incentivized the discovery of novel therapeutics in treatment regimens. The design, development, and optimization of lead compounds represent an arduous and time-consuming process that necessitates the assessment of specific criteria and metrics derived via multidisciplinary approaches incorporating functional, structural, and energetic properties. The present review focuses on specific methodologies and technologies aimed at advancing drug development with particular emphasis on the role of thermodynamics in elucidating the underlying forces governing ligand-target interaction selectivity and specificity. In the pursuit of novel therapeutics, isothermal titration calorimetry (ITC) has been utilized extensively over the past two decades to bolster drug discovery efforts, yielding information-rich thermodynamic binding signatures. A wealth of studies recognizes the need for mining thermodynamic databases to critically examine and evaluate prospective drug candidates on the basis of available metrics. The ultimate power and utility of thermodynamics within drug discovery strategies reside in the characterization and comparison of intrinsic binding signatures that facilitate the elucidation of structural-energetic correlations which assist in lead compound identification and optimization to improve overall therapeutic efficacy.