Loading…
Genome-Wide Analysis and Expression Profiles of the Dof Family in Cleistogenes songorica under Temperature, Salt and ABA Treatment
The DNA-binding with one zinc finger ( ) family of plant-specific transcription factors has a variety of important functions in gene transcriptional regulation, development, and stress responses. However, the structure and expression patterns of family have not been identified in , which is an impor...
Saved in:
| Published in: | Plants (Basel) 2021-04, Vol.10 (5), p.850 |
|---|---|
| Main Authors: | , , , , |
| Format: | Article |
| Language: | English |
| Subjects: | |
| Citations: | Items that this one cites Items that cite this one |
| Online Access: | Get full text |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| cited_by | cdi_FETCH-LOGICAL-c484t-22811085392c863b0e8faa6827492b903b05e1a9ff2900345a3b61cb94f1654a3 |
|---|---|
| cites | cdi_FETCH-LOGICAL-c484t-22811085392c863b0e8faa6827492b903b05e1a9ff2900345a3b61cb94f1654a3 |
| container_end_page | |
| container_issue | 5 |
| container_start_page | 850 |
| container_title | Plants (Basel) |
| container_volume | 10 |
| creator | Wang, Penglei Yan, Zhuanzhuan Zong, Xifang Yan, Qi Zhang, Jiyu |
| description | The DNA-binding with one zinc finger (
) family of plant-specific transcription factors has a variety of important functions in gene transcriptional regulation, development, and stress responses. However, the structure and expression patterns of
family have not been identified in
, which is an important xerophytic and perennial gramineous grass in desert grassland. In this study, 50
genes were identified in
and could be classified into four groups. According to genome-wide analysis, 46 of 50
genes were located on 20 chromosomes, and the gene structure and conserved protein motif of these proteins were analyzed. In addition, phylogenetic analysis of
genes in
,
,
, and
estimated the evolutionary relationships, and these genes were grouped into seven clusters. Moreover, the expression profiles of these
genes in
were analyzed in response to high/low temperature, salinity, and ABA treatments. These results will provide valuable information for future studies on gene classification, cloning, and functional characterization of this family in
. |
| doi_str_mv | 10.3390/plants10050850 |
| format | article |
| fullrecord | <record><control><sourceid>proquest_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_cc50466d5d7648b4899198c2b68506a6</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_cc50466d5d7648b4899198c2b68506a6</doaj_id><sourcerecordid>2532400745</sourcerecordid><originalsourceid>FETCH-LOGICAL-c484t-22811085392c863b0e8faa6827492b903b05e1a9ff2900345a3b61cb94f1654a3</originalsourceid><addsrcrecordid>eNpdksFrFDEUxgdRbKm9epSAFw9OTTKZTOYibNe2FgoKrngMmcybbZZMMiYZca_9y5vu1tI1BF54-d6P9yWvKN4SfFZVLf40WeVSJBjXWNT4RXFMKa3KpmHNy2fno-I0xg3OS-RN-OviKFdTyip6XNxdgfMjlL9MD2jhlN1GE5FyPbr4OwWI0XiHvgc_GAsR-QGlW0BfcrxUo7FbZBxaWjAx-TW4rIjerX0wWqHZ9RDQCsYJgkpzgI_oh7Jpx16cL9AqgEojuPSmeDUoG-H0MZ4UPy8vVsuv5c23q-vl4qbUTLBUUioIyT5z61rwqsMgBqW4oA1radfinKmBqHYYaItxxWpVdZzormUD4TVT1Ulxvef2Xm3kFMyowlZ6ZeQu4cNaqpCMtiC1rjHjvK_7hjPRMdG2pBWadjy_M1c8sz7vWdPcjdDrbCMoewA9vHHmVq79HykI45TVGfDhERD87xlikqOJGmz-UfBzlLSmWGRnmGbp-_-kGz-H_FUPqooyjJsd8Gyv0sHHGGB4aoZg-TAt8nBacsG75xae5P9mo7oH--S6sA</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2532400745</pqid></control><display><type>article</type><title>Genome-Wide Analysis and Expression Profiles of the Dof Family in Cleistogenes songorica under Temperature, Salt and ABA Treatment</title><source>Publicly Available Content Database</source><source>PubMed Central</source><creator>Wang, Penglei ; Yan, Zhuanzhuan ; Zong, Xifang ; Yan, Qi ; Zhang, Jiyu</creator><creatorcontrib>Wang, Penglei ; Yan, Zhuanzhuan ; Zong, Xifang ; Yan, Qi ; Zhang, Jiyu</creatorcontrib><description>The DNA-binding with one zinc finger (
) family of plant-specific transcription factors has a variety of important functions in gene transcriptional regulation, development, and stress responses. However, the structure and expression patterns of
family have not been identified in
, which is an important xerophytic and perennial gramineous grass in desert grassland. In this study, 50
genes were identified in
and could be classified into four groups. According to genome-wide analysis, 46 of 50
genes were located on 20 chromosomes, and the gene structure and conserved protein motif of these proteins were analyzed. In addition, phylogenetic analysis of
genes in
,
,
, and
estimated the evolutionary relationships, and these genes were grouped into seven clusters. Moreover, the expression profiles of these
genes in
were analyzed in response to high/low temperature, salinity, and ABA treatments. These results will provide valuable information for future studies on gene classification, cloning, and functional characterization of this family in
.</description><identifier>ISSN: 2223-7747</identifier><identifier>EISSN: 2223-7747</identifier><identifier>DOI: 10.3390/plants10050850</identifier><identifier>PMID: 33922432</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Abiotic stress ; Chromosomes ; Cleistogenes ; Cleistogenes songorica ; Cloning ; Deoxyribonucleic acid ; Deserts ; DNA ; DNA-binding ; expression profile ; Gene expression ; Gene regulation ; Genes ; Genomes ; Grasslands ; Localization ; Low temperature ; Metabolism ; one zinc finger ; phylogenetic analysis ; Phylogenetics ; Phylogeny ; Physiology ; Protein structure ; Proteins ; Rain ; RNA-Seq ; Transcription factors ; Zinc finger proteins</subject><ispartof>Plants (Basel), 2021-04, Vol.10 (5), p.850</ispartof><rights>2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 by the authors. 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c484t-22811085392c863b0e8faa6827492b903b05e1a9ff2900345a3b61cb94f1654a3</citedby><cites>FETCH-LOGICAL-c484t-22811085392c863b0e8faa6827492b903b05e1a9ff2900345a3b61cb94f1654a3</cites><orcidid>0000-0002-3642-373X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2532400745/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2532400745?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33922432$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Penglei</creatorcontrib><creatorcontrib>Yan, Zhuanzhuan</creatorcontrib><creatorcontrib>Zong, Xifang</creatorcontrib><creatorcontrib>Yan, Qi</creatorcontrib><creatorcontrib>Zhang, Jiyu</creatorcontrib><title>Genome-Wide Analysis and Expression Profiles of the Dof Family in Cleistogenes songorica under Temperature, Salt and ABA Treatment</title><title>Plants (Basel)</title><addtitle>Plants (Basel)</addtitle><description>The DNA-binding with one zinc finger (
) family of plant-specific transcription factors has a variety of important functions in gene transcriptional regulation, development, and stress responses. However, the structure and expression patterns of
family have not been identified in
, which is an important xerophytic and perennial gramineous grass in desert grassland. In this study, 50
genes were identified in
and could be classified into four groups. According to genome-wide analysis, 46 of 50
genes were located on 20 chromosomes, and the gene structure and conserved protein motif of these proteins were analyzed. In addition, phylogenetic analysis of
genes in
,
,
, and
estimated the evolutionary relationships, and these genes were grouped into seven clusters. Moreover, the expression profiles of these
genes in
were analyzed in response to high/low temperature, salinity, and ABA treatments. These results will provide valuable information for future studies on gene classification, cloning, and functional characterization of this family in
.</description><subject>Abiotic stress</subject><subject>Chromosomes</subject><subject>Cleistogenes</subject><subject>Cleistogenes songorica</subject><subject>Cloning</subject><subject>Deoxyribonucleic acid</subject><subject>Deserts</subject><subject>DNA</subject><subject>DNA-binding</subject><subject>expression profile</subject><subject>Gene expression</subject><subject>Gene regulation</subject><subject>Genes</subject><subject>Genomes</subject><subject>Grasslands</subject><subject>Localization</subject><subject>Low temperature</subject><subject>Metabolism</subject><subject>one zinc finger</subject><subject>phylogenetic analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Physiology</subject><subject>Protein structure</subject><subject>Proteins</subject><subject>Rain</subject><subject>RNA-Seq</subject><subject>Transcription factors</subject><subject>Zinc finger proteins</subject><issn>2223-7747</issn><issn>2223-7747</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdksFrFDEUxgdRbKm9epSAFw9OTTKZTOYibNe2FgoKrngMmcybbZZMMiYZca_9y5vu1tI1BF54-d6P9yWvKN4SfFZVLf40WeVSJBjXWNT4RXFMKa3KpmHNy2fno-I0xg3OS-RN-OviKFdTyip6XNxdgfMjlL9MD2jhlN1GE5FyPbr4OwWI0XiHvgc_GAsR-QGlW0BfcrxUo7FbZBxaWjAx-TW4rIjerX0wWqHZ9RDQCsYJgkpzgI_oh7Jpx16cL9AqgEojuPSmeDUoG-H0MZ4UPy8vVsuv5c23q-vl4qbUTLBUUioIyT5z61rwqsMgBqW4oA1radfinKmBqHYYaItxxWpVdZzormUD4TVT1Ulxvef2Xm3kFMyowlZ6ZeQu4cNaqpCMtiC1rjHjvK_7hjPRMdG2pBWadjy_M1c8sz7vWdPcjdDrbCMoewA9vHHmVq79HykI45TVGfDhERD87xlikqOJGmz-UfBzlLSmWGRnmGbp-_-kGz-H_FUPqooyjJsd8Gyv0sHHGGB4aoZg-TAt8nBacsG75xae5P9mo7oH--S6sA</recordid><startdate>20210423</startdate><enddate>20210423</enddate><creator>Wang, Penglei</creator><creator>Yan, Zhuanzhuan</creator><creator>Zong, Xifang</creator><creator>Yan, Qi</creator><creator>Zhang, Jiyu</creator><general>MDPI AG</general><general>MDPI</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-3642-373X</orcidid></search><sort><creationdate>20210423</creationdate><title>Genome-Wide Analysis and Expression Profiles of the Dof Family in Cleistogenes songorica under Temperature, Salt and ABA Treatment</title><author>Wang, Penglei ; Yan, Zhuanzhuan ; Zong, Xifang ; Yan, Qi ; Zhang, Jiyu</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c484t-22811085392c863b0e8faa6827492b903b05e1a9ff2900345a3b61cb94f1654a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Abiotic stress</topic><topic>Chromosomes</topic><topic>Cleistogenes</topic><topic>Cleistogenes songorica</topic><topic>Cloning</topic><topic>Deoxyribonucleic acid</topic><topic>Deserts</topic><topic>DNA</topic><topic>DNA-binding</topic><topic>expression profile</topic><topic>Gene expression</topic><topic>Gene regulation</topic><topic>Genes</topic><topic>Genomes</topic><topic>Grasslands</topic><topic>Localization</topic><topic>Low temperature</topic><topic>Metabolism</topic><topic>one zinc finger</topic><topic>phylogenetic analysis</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Physiology</topic><topic>Protein structure</topic><topic>Proteins</topic><topic>Rain</topic><topic>RNA-Seq</topic><topic>Transcription factors</topic><topic>Zinc finger proteins</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Penglei</creatorcontrib><creatorcontrib>Yan, Zhuanzhuan</creatorcontrib><creatorcontrib>Zong, Xifang</creatorcontrib><creatorcontrib>Yan, Qi</creatorcontrib><creatorcontrib>Zhang, Jiyu</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Agricultural Science Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agriculture Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Plants (Basel)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Penglei</au><au>Yan, Zhuanzhuan</au><au>Zong, Xifang</au><au>Yan, Qi</au><au>Zhang, Jiyu</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Analysis and Expression Profiles of the Dof Family in Cleistogenes songorica under Temperature, Salt and ABA Treatment</atitle><jtitle>Plants (Basel)</jtitle><addtitle>Plants (Basel)</addtitle><date>2021-04-23</date><risdate>2021</risdate><volume>10</volume><issue>5</issue><spage>850</spage><pages>850-</pages><issn>2223-7747</issn><eissn>2223-7747</eissn><abstract>The DNA-binding with one zinc finger (
) family of plant-specific transcription factors has a variety of important functions in gene transcriptional regulation, development, and stress responses. However, the structure and expression patterns of
family have not been identified in
, which is an important xerophytic and perennial gramineous grass in desert grassland. In this study, 50
genes were identified in
and could be classified into four groups. According to genome-wide analysis, 46 of 50
genes were located on 20 chromosomes, and the gene structure and conserved protein motif of these proteins were analyzed. In addition, phylogenetic analysis of
genes in
,
,
, and
estimated the evolutionary relationships, and these genes were grouped into seven clusters. Moreover, the expression profiles of these
genes in
were analyzed in response to high/low temperature, salinity, and ABA treatments. These results will provide valuable information for future studies on gene classification, cloning, and functional characterization of this family in
.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>33922432</pmid><doi>10.3390/plants10050850</doi><orcidid>https://orcid.org/0000-0002-3642-373X</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2223-7747 |
| ispartof | Plants (Basel), 2021-04, Vol.10 (5), p.850 |
| issn | 2223-7747 2223-7747 |
| language | eng |
| recordid | cdi_doaj_primary_oai_doaj_org_article_cc50466d5d7648b4899198c2b68506a6 |
| source | Publicly Available Content Database; PubMed Central |
| subjects | Abiotic stress Chromosomes Cleistogenes Cleistogenes songorica Cloning Deoxyribonucleic acid Deserts DNA DNA-binding expression profile Gene expression Gene regulation Genes Genomes Grasslands Localization Low temperature Metabolism one zinc finger phylogenetic analysis Phylogenetics Phylogeny Physiology Protein structure Proteins Rain RNA-Seq Transcription factors Zinc finger proteins |
| title | Genome-Wide Analysis and Expression Profiles of the Dof Family in Cleistogenes songorica under Temperature, Salt and ABA Treatment |
| url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-26T18%3A15%3A24IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_doaj_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genome-Wide%20Analysis%20and%20Expression%20Profiles%20of%20the%20Dof%20Family%20in%20Cleistogenes%20songorica%20under%20Temperature,%20Salt%20and%20ABA%20Treatment&rft.jtitle=Plants%20(Basel)&rft.au=Wang,%20Penglei&rft.date=2021-04-23&rft.volume=10&rft.issue=5&rft.spage=850&rft.pages=850-&rft.issn=2223-7747&rft.eissn=2223-7747&rft_id=info:doi/10.3390/plants10050850&rft_dat=%3Cproquest_doaj_%3E2532400745%3C/proquest_doaj_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c484t-22811085392c863b0e8faa6827492b903b05e1a9ff2900345a3b61cb94f1654a3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2532400745&rft_id=info:pmid/33922432&rfr_iscdi=true |