Construction and validation of a novel IGFBP3-related signature to predict prognosis and therapeutic decision making for Hepatocellular Carcinoma

• Published in: PeerJ (San Francisco, CA) CA), 2023-06, Vol.11, p.e15554-e15554, Article e15554
• Main Authors: Chen, Jianlin, Zhuang, Wanzhen, Xia, Yu, Yin, Xiaoqing, Tu, Mingshu, Zhang, Yi, Zhang, Liangming, Huang, Hengbin, Zhang, Songgao, You, Lisheng, Huang, Yi
• Format: Article
• Language: English
• Subjects: Analysis; Bioinformatics; Biomarker; Cell Biology; Diagnostic; Gastroenterology and Hepatology; Genetics; Hepatocellular carcinoma; Hepatoma; IGFBP3; Molecular Biology; Prognosis; Prognostic model
• ISSN: 2167-8359; 2167-8359
• DOI: 10.7717/peerj.15554

IGFBP3 plays a pivotal role in carcinogenesis by being anomalously expressed in some malignancies. However, the clinical value of IGFBP3 and the role of IGFBP3-related signature in HCC remain unclear. Multiple bioinformatics methods were used to determine the expression and diagnostic values of IGFBP3. The expression level of IGFBP3 was validated by RT-qPCR and IHC. A IGFBP3-related risk score (IGRS) was built correlation analysis and LASSO Cox regression analysis. Further analyses, including functional enrichment, immune status of risk groups were analyzed, and the role of IGRS in guiding clinical treatment was also evaluated. IGFBP3 expression was significantly downregulated in HCC. IGFBP3 expression correlated with multiple clinicopathological characteristics and demonstrated a powerful diagnostic capability for HCC. In addition, a novel IGRS signature was developed in TCGA, which exhibited good performance for prognosis prediction and its role was further validated in GSE14520. In TCGA and GSE14520, Cox analysis also confirmed that the IGRS could serve as an independent prognostic factor for HCC. Moreover, a nomogram with good accuracy for predicting the survival of HCC was further formulated. Additionally, enrichment analysis showed that the high-IGRS group was enriched in cancer-related pathways and immune-related pathways. Additionally, patients with high IGRS exhibited an immunosuppressive phenotype. Therefore, patients with low IGRS scores may benefit from immunotherapy. IGFBP3 can act as a new diagnostic factor for HCC. IGRS signature represents a valuable predictive tool in the prognosis prediction and therapeutic decision making for Hepatocellular Carcinoma.