Whole chloroplast genome sequence and phylogenetic analysis of Calanthe discolor (Orchidaceae)

The orchid , which has high ornamental and medicinal value, is mainly distributed in Zhejiang, Jiangsu, and southeast Hubei Provinces of China, as well as in Japan and the southern Korean peninsula. In this study, the whole chloroplast genome sequence of was first assembled using high-throughput Ill...

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Bibliographic Details
Published in:Mitochondrial DNA. Part B. Resources 2024-10, Vol.9 (10), p.1345-1349
Main Authors: Liu, Qiuping, Song, Qin, Yu, Yan, Shi, Yiming, Lu, Minghui, Chen, Yan, Tan, Leitao
Format: Article
Language:English
Subjects:
Calanthe discolor
Chloroplasts
complete chloroplast genome
Data Note
Genes
Genetic testing
Genomes
Genomic analysis
Life sciences
Mitochondrial DNA
Nucleotide sequence
Orchidaceae
Phylogenetics
Phylogeny
Plastome Report
Proteins
Sea level
Transfer RNA
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Summary:The orchid , which has high ornamental and medicinal value, is mainly distributed in Zhejiang, Jiangsu, and southeast Hubei Provinces of China, as well as in Japan and the southern Korean peninsula. In this study, the whole chloroplast genome sequence of was first assembled using high-throughput Illumina paired-end technology, providing data to evaluate the evolution of this species. The chloroplast genome was158,286 bp long, including a large single-copy region of 87,095 bp, a small single-copy region of 18,407 bp, and two copies of a repeat region (26,392-bp each). The overall G + C content was 41.2%. A total of 133 genes were predicted from the genome, including 87 protein-coding genes, eight ribosomal RNAs, 38 transfer RNAs. Phylogenetic analysis indicated a close relationship between C. and .
ISSN:2380-2359
2380-2359
DOI:10.1080/23802359.2024.2411376