Loading…
Machine learning in toxicological sciences: opportunities for assessing drug toxicity
Machine learning (ML) in toxicological sciences is growing exponentially, which presents unprecedented opportunities and brings up important considerations for using ML in this field. This review discusses supervised, unsupervised, and reinforcement learning and their applications to toxicology. The...
Saved in:
Published in: | Frontiers in drug discovery 2024-02, Vol.4 |
---|---|
Main Authors: | , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | |
---|---|
cites | cdi_FETCH-LOGICAL-c1535-50d0d6aa027541f8185a9efee25560c9dc89fb6eb94473e4a6dda1bdabeb60bc3 |
container_end_page | |
container_issue | |
container_start_page | |
container_title | Frontiers in drug discovery |
container_volume | 4 |
creator | Tonoyan, Lusine Siraki, Arno G. |
description | Machine learning (ML) in toxicological sciences is growing exponentially, which presents unprecedented opportunities and brings up important considerations for using ML in this field. This review discusses supervised, unsupervised, and reinforcement learning and their applications to toxicology. The application of the scientific method is central to the development of a ML model. These steps involve defining the ML problem, constructing the dataset, transforming the data and feature selection, choosing and training a ML model, validation, and prediction. The need for rigorous models is becoming more of a requirement due to the vast number of chemicals and their interaction with biota. Large datasets make this task possible, though selecting databases with overlapping chemical spaces, amongst other things, is an important consideration. Predicting toxicity through machine learning can have significant societal impacts, including enhancements in assessing risks, determining clinical toxicities, evaluating carcinogenic properties, and detecting harmful side effects of medications. We provide a concise overview of the current state of this topic, focusing on the potential benefits and challenges related to the availability of extensive datasets, the methodologies for analyzing these datasets, and the ethical implications involved in applying such models. |
doi_str_mv | 10.3389/fddsv.2024.1336025 |
format | article |
fullrecord | <record><control><sourceid>doaj_cross</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_d1d3749e46bb466c8c4a35fe0eb1fbe2</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_d1d3749e46bb466c8c4a35fe0eb1fbe2</doaj_id><sourcerecordid>oai_doaj_org_article_d1d3749e46bb466c8c4a35fe0eb1fbe2</sourcerecordid><originalsourceid>FETCH-LOGICAL-c1535-50d0d6aa027541f8185a9efee25560c9dc89fb6eb94473e4a6dda1bdabeb60bc3</originalsourceid><addsrcrecordid>eNpNkMtOwzAQRSMEElXpD7DKD6T4nYQdqnhUKmJD19bYHgdXIa7sFNG_hz6EWN3RHd2zOEVxS8mc86a9887lrzkjTMwp54oweVFMmKpFRX7_l__u62KW84YQwppatqKeFOtXsB9hwLJHSEMYujIM5Ri_g4197IKFvsw24GAx35dxu41p3A1hDJhLH1MJOWPOh5lLu-40DOP-prjy0GecnXNarJ8e3xcv1ertebl4WFWWSi4rSRxxCoCwWgrqG9pIaNEjMikVsa2zTeuNQtMKUXMUoJwDahwYNIoYy6fF8sR1ETZ6m8InpL2OEPSxiKnTkMZge9SOOl6LFoUyRihlGyuAS48EDfUG2S-LnVg2xZwT-j8eJfrgWR8964NnffbMfwBZynSq</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Machine learning in toxicological sciences: opportunities for assessing drug toxicity</title><source>Alma/SFX Local Collection</source><creator>Tonoyan, Lusine ; Siraki, Arno G.</creator><creatorcontrib>Tonoyan, Lusine ; Siraki, Arno G.</creatorcontrib><description>Machine learning (ML) in toxicological sciences is growing exponentially, which presents unprecedented opportunities and brings up important considerations for using ML in this field. This review discusses supervised, unsupervised, and reinforcement learning and their applications to toxicology. The application of the scientific method is central to the development of a ML model. These steps involve defining the ML problem, constructing the dataset, transforming the data and feature selection, choosing and training a ML model, validation, and prediction. The need for rigorous models is becoming more of a requirement due to the vast number of chemicals and their interaction with biota. Large datasets make this task possible, though selecting databases with overlapping chemical spaces, amongst other things, is an important consideration. Predicting toxicity through machine learning can have significant societal impacts, including enhancements in assessing risks, determining clinical toxicities, evaluating carcinogenic properties, and detecting harmful side effects of medications. We provide a concise overview of the current state of this topic, focusing on the potential benefits and challenges related to the availability of extensive datasets, the methodologies for analyzing these datasets, and the ethical implications involved in applying such models.</description><identifier>ISSN: 2674-0338</identifier><identifier>EISSN: 2674-0338</identifier><identifier>DOI: 10.3389/fddsv.2024.1336025</identifier><language>eng</language><publisher>Frontiers Media S.A</publisher><subject>adverse drug reaction (ADR) ; artificial intelligence (AI) ; drug-induced liver injury (DILI) ; machine learning (ML) ; mean squared error (MSE) ; toxicology</subject><ispartof>Frontiers in drug discovery, 2024-02, Vol.4</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c1535-50d0d6aa027541f8185a9efee25560c9dc89fb6eb94473e4a6dda1bdabeb60bc3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27915,27916</link.rule.ids></links><search><creatorcontrib>Tonoyan, Lusine</creatorcontrib><creatorcontrib>Siraki, Arno G.</creatorcontrib><title>Machine learning in toxicological sciences: opportunities for assessing drug toxicity</title><title>Frontiers in drug discovery</title><description>Machine learning (ML) in toxicological sciences is growing exponentially, which presents unprecedented opportunities and brings up important considerations for using ML in this field. This review discusses supervised, unsupervised, and reinforcement learning and their applications to toxicology. The application of the scientific method is central to the development of a ML model. These steps involve defining the ML problem, constructing the dataset, transforming the data and feature selection, choosing and training a ML model, validation, and prediction. The need for rigorous models is becoming more of a requirement due to the vast number of chemicals and their interaction with biota. Large datasets make this task possible, though selecting databases with overlapping chemical spaces, amongst other things, is an important consideration. Predicting toxicity through machine learning can have significant societal impacts, including enhancements in assessing risks, determining clinical toxicities, evaluating carcinogenic properties, and detecting harmful side effects of medications. We provide a concise overview of the current state of this topic, focusing on the potential benefits and challenges related to the availability of extensive datasets, the methodologies for analyzing these datasets, and the ethical implications involved in applying such models.</description><subject>adverse drug reaction (ADR)</subject><subject>artificial intelligence (AI)</subject><subject>drug-induced liver injury (DILI)</subject><subject>machine learning (ML)</subject><subject>mean squared error (MSE)</subject><subject>toxicology</subject><issn>2674-0338</issn><issn>2674-0338</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpNkMtOwzAQRSMEElXpD7DKD6T4nYQdqnhUKmJD19bYHgdXIa7sFNG_hz6EWN3RHd2zOEVxS8mc86a9887lrzkjTMwp54oweVFMmKpFRX7_l__u62KW84YQwppatqKeFOtXsB9hwLJHSEMYujIM5Ri_g4197IKFvsw24GAx35dxu41p3A1hDJhLH1MJOWPOh5lLu-40DOP-prjy0GecnXNarJ8e3xcv1ertebl4WFWWSi4rSRxxCoCwWgrqG9pIaNEjMikVsa2zTeuNQtMKUXMUoJwDahwYNIoYy6fF8sR1ETZ6m8InpL2OEPSxiKnTkMZge9SOOl6LFoUyRihlGyuAS48EDfUG2S-LnVg2xZwT-j8eJfrgWR8964NnffbMfwBZynSq</recordid><startdate>20240208</startdate><enddate>20240208</enddate><creator>Tonoyan, Lusine</creator><creator>Siraki, Arno G.</creator><general>Frontiers Media S.A</general><scope>AAYXX</scope><scope>CITATION</scope><scope>DOA</scope></search><sort><creationdate>20240208</creationdate><title>Machine learning in toxicological sciences: opportunities for assessing drug toxicity</title><author>Tonoyan, Lusine ; Siraki, Arno G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c1535-50d0d6aa027541f8185a9efee25560c9dc89fb6eb94473e4a6dda1bdabeb60bc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>adverse drug reaction (ADR)</topic><topic>artificial intelligence (AI)</topic><topic>drug-induced liver injury (DILI)</topic><topic>machine learning (ML)</topic><topic>mean squared error (MSE)</topic><topic>toxicology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tonoyan, Lusine</creatorcontrib><creatorcontrib>Siraki, Arno G.</creatorcontrib><collection>CrossRef</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Frontiers in drug discovery</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tonoyan, Lusine</au><au>Siraki, Arno G.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Machine learning in toxicological sciences: opportunities for assessing drug toxicity</atitle><jtitle>Frontiers in drug discovery</jtitle><date>2024-02-08</date><risdate>2024</risdate><volume>4</volume><issn>2674-0338</issn><eissn>2674-0338</eissn><abstract>Machine learning (ML) in toxicological sciences is growing exponentially, which presents unprecedented opportunities and brings up important considerations for using ML in this field. This review discusses supervised, unsupervised, and reinforcement learning and their applications to toxicology. The application of the scientific method is central to the development of a ML model. These steps involve defining the ML problem, constructing the dataset, transforming the data and feature selection, choosing and training a ML model, validation, and prediction. The need for rigorous models is becoming more of a requirement due to the vast number of chemicals and their interaction with biota. Large datasets make this task possible, though selecting databases with overlapping chemical spaces, amongst other things, is an important consideration. Predicting toxicity through machine learning can have significant societal impacts, including enhancements in assessing risks, determining clinical toxicities, evaluating carcinogenic properties, and detecting harmful side effects of medications. We provide a concise overview of the current state of this topic, focusing on the potential benefits and challenges related to the availability of extensive datasets, the methodologies for analyzing these datasets, and the ethical implications involved in applying such models.</abstract><pub>Frontiers Media S.A</pub><doi>10.3389/fddsv.2024.1336025</doi><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2674-0338 |
ispartof | Frontiers in drug discovery, 2024-02, Vol.4 |
issn | 2674-0338 2674-0338 |
language | eng |
recordid | cdi_doaj_primary_oai_doaj_org_article_d1d3749e46bb466c8c4a35fe0eb1fbe2 |
source | Alma/SFX Local Collection |
subjects | adverse drug reaction (ADR) artificial intelligence (AI) drug-induced liver injury (DILI) machine learning (ML) mean squared error (MSE) toxicology |
title | Machine learning in toxicological sciences: opportunities for assessing drug toxicity |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-15T00%3A22%3A56IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-doaj_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Machine%20learning%20in%20toxicological%20sciences:%20opportunities%20for%20assessing%20drug%20toxicity&rft.jtitle=Frontiers%20in%20drug%20discovery&rft.au=Tonoyan,%20Lusine&rft.date=2024-02-08&rft.volume=4&rft.issn=2674-0338&rft.eissn=2674-0338&rft_id=info:doi/10.3389/fddsv.2024.1336025&rft_dat=%3Cdoaj_cross%3Eoai_doaj_org_article_d1d3749e46bb466c8c4a35fe0eb1fbe2%3C/doaj_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c1535-50d0d6aa027541f8185a9efee25560c9dc89fb6eb94473e4a6dda1bdabeb60bc3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true |