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Integrated analysis and experiments uncover the function of disulfidptosis in predicting immunotherapy effectiveness and delineating immune landscapes in uterine corpus endometrial carcinoma
Recently, a novel type of metabolic-regulated cell demise titled disulfidptosis has been discovered. Studies have demonstrated its importance in immune responses against cancer and its impact on the proliferation of cancer cells. Nonetheless, the precise mechanism and roles of disulfidptosis are not...
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Published in: | Frontiers in immunology 2024-10, Vol.15, p.1454730 |
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description | Recently, a novel type of metabolic-regulated cell demise titled disulfidptosis has been discovered. Studies have demonstrated its importance in immune responses against cancer and its impact on the proliferation of cancer cells. Nonetheless, the precise mechanism and roles of disulfidptosis are not fully understood, particularly regarding the prognosis for individuals with uterine corpus endometrial carcinoma (UCEC).
In this research, a distinctive disulfidptosis pattern was developed in UCEC, and by utilizing Non-negative Matrix Factorization (NMF) on 23 disulfidptosis related genes within the TCGA database, 3 distinct subgroups were distinguished. To collect data, we acquired gene expression profiles, somatic mutation information, copy number variation data, and corresponding clinical data from the TCGA and GEO database, specifically from UCEC patients. Cell line experiments and immunohistochemical (IHC) staining were conducted to validate the role of the LRPPRC in proliferation, migration and invasion.
The genetic features and immune microenvironment of these subgroups were examined. It is worth mentioning that these subgroups offer important insights into comprehending the tumor microenvironment (TME) and the response of patients to immunotherapy and chemotherapy. Moreover, a disulfidptosis model was developed and validated, demonstrating a high level of accuracy in predicting the prognosis and outcomes of immunotherapy in UCEC patients. Additionally, a novel biomarker, LRPPRC, was identified, which can server as a promising predictor for forecasting prognosis in UCEC patients, with validation through tissue microarray staining and cell line experiments.
This study has designed a classification system and a disulfidptosis model for UCEC, in addition to identifying a new biomarker, LRPPRC, for UCEC. These advancements serve as reliable and positive indicators for predicting outcomes and the efficacy of immunotherapy for each UCEC patient. |
doi_str_mv | 10.3389/fimmu.2024.1454730 |
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In this research, a distinctive disulfidptosis pattern was developed in UCEC, and by utilizing Non-negative Matrix Factorization (NMF) on 23 disulfidptosis related genes within the TCGA database, 3 distinct subgroups were distinguished. To collect data, we acquired gene expression profiles, somatic mutation information, copy number variation data, and corresponding clinical data from the TCGA and GEO database, specifically from UCEC patients. Cell line experiments and immunohistochemical (IHC) staining were conducted to validate the role of the LRPPRC in proliferation, migration and invasion.
The genetic features and immune microenvironment of these subgroups were examined. It is worth mentioning that these subgroups offer important insights into comprehending the tumor microenvironment (TME) and the response of patients to immunotherapy and chemotherapy. Moreover, a disulfidptosis model was developed and validated, demonstrating a high level of accuracy in predicting the prognosis and outcomes of immunotherapy in UCEC patients. Additionally, a novel biomarker, LRPPRC, was identified, which can server as a promising predictor for forecasting prognosis in UCEC patients, with validation through tissue microarray staining and cell line experiments.
This study has designed a classification system and a disulfidptosis model for UCEC, in addition to identifying a new biomarker, LRPPRC, for UCEC. These advancements serve as reliable and positive indicators for predicting outcomes and the efficacy of immunotherapy for each UCEC patient.</description><identifier>ISSN: 1664-3224</identifier><identifier>EISSN: 1664-3224</identifier><identifier>DOI: 10.3389/fimmu.2024.1454730</identifier><identifier>PMID: 39445012</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>Apoptosis ; Biomarkers, Tumor ; Cell Line, Tumor ; Cell Proliferation ; disulfidptosis ; Endometrial Neoplasms - genetics ; Endometrial Neoplasms - immunology ; Endometrial Neoplasms - pathology ; Endometrial Neoplasms - therapy ; Female ; Gene Expression Profiling ; Gene Expression Regulation, Neoplastic ; Humans ; Immunology ; immunotherapy ; Immunotherapy - methods ; LRPPRC ; Prognosis ; tumor microenvironment ; Tumor Microenvironment - immunology ; uterine corpus endometrial carcinoma</subject><ispartof>Frontiers in immunology, 2024-10, Vol.15, p.1454730</ispartof><rights>Copyright © 2024 Han, Li, Yu, Liu, Gao, Wang, Chen, Xu, Zhang, Xu, Pan, Huang and Yi.</rights><rights>Copyright © 2024 Han, Li, Yu, Liu, Gao, Wang, Chen, Xu, Zhang, Xu, Pan, Huang and Yi 2024 Han, Li, Yu, Liu, Gao, Wang, Chen, Xu, Zhang, Xu, Pan, Huang and Yi</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c350t-5f7524aee7864456f45a5a8e539d4d7626d0293724a30754eb5bb531c7d1c33e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11496088/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11496088/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39445012$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Han, Lei</creatorcontrib><creatorcontrib>Li, Yilin</creatorcontrib><creatorcontrib>Yu, Yanjie</creatorcontrib><creatorcontrib>Liu, Guo</creatorcontrib><creatorcontrib>Gao, Xiangqian</creatorcontrib><creatorcontrib>Wang, Fei</creatorcontrib><creatorcontrib>Chen, Weiwei</creatorcontrib><creatorcontrib>Xu, Huishu</creatorcontrib><creatorcontrib>Zhang, Baolin</creatorcontrib><creatorcontrib>Xu, Yingjiang</creatorcontrib><creatorcontrib>Pan, Yitong</creatorcontrib><creatorcontrib>Huang, Yu</creatorcontrib><creatorcontrib>Yi, Ping</creatorcontrib><title>Integrated analysis and experiments uncover the function of disulfidptosis in predicting immunotherapy effectiveness and delineating immune landscapes in uterine corpus endometrial carcinoma</title><title>Frontiers in immunology</title><addtitle>Front Immunol</addtitle><description>Recently, a novel type of metabolic-regulated cell demise titled disulfidptosis has been discovered. Studies have demonstrated its importance in immune responses against cancer and its impact on the proliferation of cancer cells. Nonetheless, the precise mechanism and roles of disulfidptosis are not fully understood, particularly regarding the prognosis for individuals with uterine corpus endometrial carcinoma (UCEC).
In this research, a distinctive disulfidptosis pattern was developed in UCEC, and by utilizing Non-negative Matrix Factorization (NMF) on 23 disulfidptosis related genes within the TCGA database, 3 distinct subgroups were distinguished. To collect data, we acquired gene expression profiles, somatic mutation information, copy number variation data, and corresponding clinical data from the TCGA and GEO database, specifically from UCEC patients. Cell line experiments and immunohistochemical (IHC) staining were conducted to validate the role of the LRPPRC in proliferation, migration and invasion.
The genetic features and immune microenvironment of these subgroups were examined. It is worth mentioning that these subgroups offer important insights into comprehending the tumor microenvironment (TME) and the response of patients to immunotherapy and chemotherapy. Moreover, a disulfidptosis model was developed and validated, demonstrating a high level of accuracy in predicting the prognosis and outcomes of immunotherapy in UCEC patients. Additionally, a novel biomarker, LRPPRC, was identified, which can server as a promising predictor for forecasting prognosis in UCEC patients, with validation through tissue microarray staining and cell line experiments.
This study has designed a classification system and a disulfidptosis model for UCEC, in addition to identifying a new biomarker, LRPPRC, for UCEC. These advancements serve as reliable and positive indicators for predicting outcomes and the efficacy of immunotherapy for each UCEC patient.</description><subject>Apoptosis</subject><subject>Biomarkers, Tumor</subject><subject>Cell Line, Tumor</subject><subject>Cell Proliferation</subject><subject>disulfidptosis</subject><subject>Endometrial Neoplasms - genetics</subject><subject>Endometrial Neoplasms - immunology</subject><subject>Endometrial Neoplasms - pathology</subject><subject>Endometrial Neoplasms - therapy</subject><subject>Female</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Neoplastic</subject><subject>Humans</subject><subject>Immunology</subject><subject>immunotherapy</subject><subject>Immunotherapy - methods</subject><subject>LRPPRC</subject><subject>Prognosis</subject><subject>tumor microenvironment</subject><subject>Tumor Microenvironment - immunology</subject><subject>uterine corpus endometrial carcinoma</subject><issn>1664-3224</issn><issn>1664-3224</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVUktvEzEQXiEQrUL_AAfkI5cEP3ezJ4QqHpEqcYGzNbHHqatde7G9Eflz_DacB6X1xeNvZr4Zz3xN85bRlRDr_oPz4zivOOVyxaSSnaAvmmvWtnIpOJcvn9hXzU3OD7Qe2Qsh1OvmSvRSKsr4dfNnEwruEhS0BAIMh-xzNSzB3xMmP2IomczBxD0mUu6RuPooPgYSHbE-z4PzdirxmOYDmRJaX_1hR479hVhTEkwHgs5hxfcYMJ8LWBx8QPgfi2SoeDYw4YlrLrWBipqYpjkTDDaOWJKHgRhIxoc4wpvmlYMh483lXjQ_v3z-cftteff96-b2093SCEXLUrlOcQmI3bqtP2-dVKBgjUr0Vtqu5a2lvBddjRG0UxK3artVgpnOMiMEikWzOfPaCA96qoOBdNARvD4BMe00pOLNgNpy6pST0K7rWnivgPXUQOcUWmNUZyrXxzPXNG_HCtYRJxiekT73BH-vd3GvGZN9S9fryvD-wpDirxlz0aPPBoc6P4xz1oJxSlXf1W0vGn4ONSnmnNA91mFUH4WkT0LSRyHpi5Bq0runHT6m_JON-Auxesxq</recordid><startdate>20241009</startdate><enddate>20241009</enddate><creator>Han, Lei</creator><creator>Li, Yilin</creator><creator>Yu, Yanjie</creator><creator>Liu, Guo</creator><creator>Gao, Xiangqian</creator><creator>Wang, Fei</creator><creator>Chen, Weiwei</creator><creator>Xu, Huishu</creator><creator>Zhang, Baolin</creator><creator>Xu, Yingjiang</creator><creator>Pan, Yitong</creator><creator>Huang, Yu</creator><creator>Yi, Ping</creator><general>Frontiers Media S.A</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20241009</creationdate><title>Integrated analysis and experiments uncover the function of disulfidptosis in predicting immunotherapy effectiveness and delineating immune landscapes in uterine corpus endometrial carcinoma</title><author>Han, Lei ; Li, Yilin ; Yu, Yanjie ; Liu, Guo ; Gao, Xiangqian ; Wang, Fei ; Chen, Weiwei ; Xu, Huishu ; Zhang, Baolin ; Xu, Yingjiang ; Pan, Yitong ; Huang, Yu ; Yi, Ping</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c350t-5f7524aee7864456f45a5a8e539d4d7626d0293724a30754eb5bb531c7d1c33e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Apoptosis</topic><topic>Biomarkers, Tumor</topic><topic>Cell Line, Tumor</topic><topic>Cell Proliferation</topic><topic>disulfidptosis</topic><topic>Endometrial Neoplasms - genetics</topic><topic>Endometrial Neoplasms - immunology</topic><topic>Endometrial Neoplasms - pathology</topic><topic>Endometrial Neoplasms - therapy</topic><topic>Female</topic><topic>Gene Expression Profiling</topic><topic>Gene Expression Regulation, Neoplastic</topic><topic>Humans</topic><topic>Immunology</topic><topic>immunotherapy</topic><topic>Immunotherapy - methods</topic><topic>LRPPRC</topic><topic>Prognosis</topic><topic>tumor microenvironment</topic><topic>Tumor Microenvironment - immunology</topic><topic>uterine corpus endometrial carcinoma</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Han, Lei</creatorcontrib><creatorcontrib>Li, Yilin</creatorcontrib><creatorcontrib>Yu, Yanjie</creatorcontrib><creatorcontrib>Liu, Guo</creatorcontrib><creatorcontrib>Gao, Xiangqian</creatorcontrib><creatorcontrib>Wang, Fei</creatorcontrib><creatorcontrib>Chen, Weiwei</creatorcontrib><creatorcontrib>Xu, Huishu</creatorcontrib><creatorcontrib>Zhang, Baolin</creatorcontrib><creatorcontrib>Xu, Yingjiang</creatorcontrib><creatorcontrib>Pan, Yitong</creatorcontrib><creatorcontrib>Huang, Yu</creatorcontrib><creatorcontrib>Yi, Ping</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Frontiers in immunology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Han, Lei</au><au>Li, Yilin</au><au>Yu, Yanjie</au><au>Liu, Guo</au><au>Gao, Xiangqian</au><au>Wang, Fei</au><au>Chen, Weiwei</au><au>Xu, Huishu</au><au>Zhang, Baolin</au><au>Xu, Yingjiang</au><au>Pan, Yitong</au><au>Huang, Yu</au><au>Yi, Ping</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Integrated analysis and experiments uncover the function of disulfidptosis in predicting immunotherapy effectiveness and delineating immune landscapes in uterine corpus endometrial carcinoma</atitle><jtitle>Frontiers in immunology</jtitle><addtitle>Front Immunol</addtitle><date>2024-10-09</date><risdate>2024</risdate><volume>15</volume><spage>1454730</spage><pages>1454730-</pages><issn>1664-3224</issn><eissn>1664-3224</eissn><abstract>Recently, a novel type of metabolic-regulated cell demise titled disulfidptosis has been discovered. Studies have demonstrated its importance in immune responses against cancer and its impact on the proliferation of cancer cells. Nonetheless, the precise mechanism and roles of disulfidptosis are not fully understood, particularly regarding the prognosis for individuals with uterine corpus endometrial carcinoma (UCEC).
In this research, a distinctive disulfidptosis pattern was developed in UCEC, and by utilizing Non-negative Matrix Factorization (NMF) on 23 disulfidptosis related genes within the TCGA database, 3 distinct subgroups were distinguished. To collect data, we acquired gene expression profiles, somatic mutation information, copy number variation data, and corresponding clinical data from the TCGA and GEO database, specifically from UCEC patients. Cell line experiments and immunohistochemical (IHC) staining were conducted to validate the role of the LRPPRC in proliferation, migration and invasion.
The genetic features and immune microenvironment of these subgroups were examined. It is worth mentioning that these subgroups offer important insights into comprehending the tumor microenvironment (TME) and the response of patients to immunotherapy and chemotherapy. Moreover, a disulfidptosis model was developed and validated, demonstrating a high level of accuracy in predicting the prognosis and outcomes of immunotherapy in UCEC patients. Additionally, a novel biomarker, LRPPRC, was identified, which can server as a promising predictor for forecasting prognosis in UCEC patients, with validation through tissue microarray staining and cell line experiments.
This study has designed a classification system and a disulfidptosis model for UCEC, in addition to identifying a new biomarker, LRPPRC, for UCEC. These advancements serve as reliable and positive indicators for predicting outcomes and the efficacy of immunotherapy for each UCEC patient.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>39445012</pmid><doi>10.3389/fimmu.2024.1454730</doi><oa>free_for_read</oa></addata></record> |
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subjects | Apoptosis Biomarkers, Tumor Cell Line, Tumor Cell Proliferation disulfidptosis Endometrial Neoplasms - genetics Endometrial Neoplasms - immunology Endometrial Neoplasms - pathology Endometrial Neoplasms - therapy Female Gene Expression Profiling Gene Expression Regulation, Neoplastic Humans Immunology immunotherapy Immunotherapy - methods LRPPRC Prognosis tumor microenvironment Tumor Microenvironment - immunology uterine corpus endometrial carcinoma |
title | Integrated analysis and experiments uncover the function of disulfidptosis in predicting immunotherapy effectiveness and delineating immune landscapes in uterine corpus endometrial carcinoma |
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