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Identification of One Major QTL and a Novel Gene OsIAA17q5 Associated with Tiller Number in Rice Using QTL Analysis
Rice tillers are one of the most important traits for the yield and development of rice, although little is known about its mode of inheritance. Tiller numbers were recorded every 7 days a total of nine times, starting 30 days after transplantation. Quantitative trait locus (QTL) based analysis on a...
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| Published in: | Plants (Basel) 2022-02, Vol.11 (4), p.538 |
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| container_title | Plants (Basel) |
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| creator | Zhao, Dan-Dan Park, Jae-Ryoung Jang, Yoon-Hee Kim, Eun-Gyeong Du, Xiao-Xuan Farooq, Muhammad Yun, Byoung-Ju Kim, Kyung-Min |
| description | Rice tillers are one of the most important traits for the yield and development of rice, although little is known about its mode of inheritance. Tiller numbers were recorded every 7 days a total of nine times, starting 30 days after transplantation. Quantitative trait locus (QTL) based analysis on a set of double haploid population derivatives of a cross between the Cheongcheong and Nagdong varieties identified a major effect of locus RM18130-RM3381 on chromosome 5, which was expressed in eight different growth stages. Within the target region RM18130-RM3381 (physical distance: 2.08 Mb), 61 candidate genes were screened by annotation. Among the candidate genes,
(named
), which belongs to the family of auxin-responsive genes, was selected as a target. Auxin promotes cell division and meristem maintenance and is an effective plant regulator which influences plant growth and development by altering the expression of various genes.
is expected to control the number of tillers. The present study provides further understanding of the basic genetic mechanisms that selectively express the control of tiller numbers in different growth stages, as well as provides valuable information for future research aimed at cloning the target gene. These results may contribute to developing a comprehensive understanding of the basic genetic processes regulating the developmental behavior of tiller numbers in rice. |
| doi_str_mv | 10.3390/plants11040538 |
| format | article |
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(named
), which belongs to the family of auxin-responsive genes, was selected as a target. Auxin promotes cell division and meristem maintenance and is an effective plant regulator which influences plant growth and development by altering the expression of various genes.
is expected to control the number of tillers. The present study provides further understanding of the basic genetic mechanisms that selectively express the control of tiller numbers in different growth stages, as well as provides valuable information for future research aimed at cloning the target gene. These results may contribute to developing a comprehensive understanding of the basic genetic processes regulating the developmental behavior of tiller numbers in rice.</description><identifier>ISSN: 2223-7747</identifier><identifier>EISSN: 2223-7747</identifier><identifier>DOI: 10.3390/plants11040538</identifier><identifier>PMID: 35214873</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Agricultural production ; Annotations ; auxin ; Auxins ; Cell division ; Chromosome 5 ; Chromosomes ; Cloning ; Gene expression ; Gene mapping ; Genes ; growth stage ; Heredity ; Meristems ; Plant growth ; Population ; Quantitative genetics ; Quantitative trait loci ; quantitative trait locus ; Rice ; rice yield ; Signal transduction ; tiller number ; Tillers ; Transplantation</subject><ispartof>Plants (Basel), 2022-02, Vol.11 (4), p.538</ispartof><rights>2022 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2022 by the authors. 2022</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c484t-7623cadf1f8846ce09c4519e233b8e8f3ed23b1f0869f14d61c1ea258fe623263</citedby><cites>FETCH-LOGICAL-c484t-7623cadf1f8846ce09c4519e233b8e8f3ed23b1f0869f14d61c1ea258fe623263</cites><orcidid>0000-0003-4812-6297 ; 0000-0003-2207-5313 ; 0000-0002-9898-2262 ; 0000-0002-8532-608X ; 0000-0003-0294-6740</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2633255839/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2633255839?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35214873$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhao, Dan-Dan</creatorcontrib><creatorcontrib>Park, Jae-Ryoung</creatorcontrib><creatorcontrib>Jang, Yoon-Hee</creatorcontrib><creatorcontrib>Kim, Eun-Gyeong</creatorcontrib><creatorcontrib>Du, Xiao-Xuan</creatorcontrib><creatorcontrib>Farooq, Muhammad</creatorcontrib><creatorcontrib>Yun, Byoung-Ju</creatorcontrib><creatorcontrib>Kim, Kyung-Min</creatorcontrib><title>Identification of One Major QTL and a Novel Gene OsIAA17q5 Associated with Tiller Number in Rice Using QTL Analysis</title><title>Plants (Basel)</title><addtitle>Plants (Basel)</addtitle><description>Rice tillers are one of the most important traits for the yield and development of rice, although little is known about its mode of inheritance. Tiller numbers were recorded every 7 days a total of nine times, starting 30 days after transplantation. Quantitative trait locus (QTL) based analysis on a set of double haploid population derivatives of a cross between the Cheongcheong and Nagdong varieties identified a major effect of locus RM18130-RM3381 on chromosome 5, which was expressed in eight different growth stages. Within the target region RM18130-RM3381 (physical distance: 2.08 Mb), 61 candidate genes were screened by annotation. Among the candidate genes,
(named
), which belongs to the family of auxin-responsive genes, was selected as a target. Auxin promotes cell division and meristem maintenance and is an effective plant regulator which influences plant growth and development by altering the expression of various genes.
is expected to control the number of tillers. The present study provides further understanding of the basic genetic mechanisms that selectively express the control of tiller numbers in different growth stages, as well as provides valuable information for future research aimed at cloning the target gene. These results may contribute to developing a comprehensive understanding of the basic genetic processes regulating the developmental behavior of tiller numbers in rice.</description><subject>Agricultural production</subject><subject>Annotations</subject><subject>auxin</subject><subject>Auxins</subject><subject>Cell division</subject><subject>Chromosome 5</subject><subject>Chromosomes</subject><subject>Cloning</subject><subject>Gene expression</subject><subject>Gene mapping</subject><subject>Genes</subject><subject>growth stage</subject><subject>Heredity</subject><subject>Meristems</subject><subject>Plant growth</subject><subject>Population</subject><subject>Quantitative genetics</subject><subject>Quantitative trait loci</subject><subject>quantitative trait locus</subject><subject>Rice</subject><subject>rice yield</subject><subject>Signal transduction</subject><subject>tiller number</subject><subject>Tillers</subject><subject>Transplantation</subject><issn>2223-7747</issn><issn>2223-7747</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdkt9LHDEQxxdpUbG--iiBvvTldPNrk30pLGLtwdWj5XwOuWRy5thLzmTX4n_f6Kl4DYEJme98ZjKZqjrD9QWlbX257XUYMsY1qzmVB9UxIYROhGDi04fzUXWa87ouS5aNm8PqiHKCmRT0uMpTC2Hwzhs9-BhQdGgeAP3S65jQ78UM6WCRRrfxEXp0A8U1z9Ouw-KBoy7naLwewKK_frhHC9_3kNDtuFkW4wP64w2gu-zD6gXVBd0_ZZ-_VJ-d7jOcvtqT6u7H9eLq52Q2v5ledbOJYZINE9EQarR12EnJGgN1axjHLRBKlxKko2AJXWJXy6Z1mNkGGwyacOmgRJKGnlTTHddGvVbb5Dc6PamovXq5iGmldBq86UFZIZuaW9saaxi2jRSMSiaEwJQxsLSwvu9Y23G5AWtK05Lu96D7nuDv1So-KikFx7ItgG-vgBQfRsiD2vhsoC9fCHHMqtRbMpa8ski__iddxzGV5u1UhHNJn4EXO5VJMecE7r0YXKvn8VD741ECzj8-4V3-Ngz0H2kotHA</recordid><startdate>20220217</startdate><enddate>20220217</enddate><creator>Zhao, Dan-Dan</creator><creator>Park, Jae-Ryoung</creator><creator>Jang, Yoon-Hee</creator><creator>Kim, Eun-Gyeong</creator><creator>Du, Xiao-Xuan</creator><creator>Farooq, Muhammad</creator><creator>Yun, Byoung-Ju</creator><creator>Kim, Kyung-Min</creator><general>MDPI AG</general><general>MDPI</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SN</scope><scope>7SS</scope><scope>7T7</scope><scope>7X2</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0003-4812-6297</orcidid><orcidid>https://orcid.org/0000-0003-2207-5313</orcidid><orcidid>https://orcid.org/0000-0002-9898-2262</orcidid><orcidid>https://orcid.org/0000-0002-8532-608X</orcidid><orcidid>https://orcid.org/0000-0003-0294-6740</orcidid></search><sort><creationdate>20220217</creationdate><title>Identification of One Major QTL and a Novel Gene OsIAA17q5 Associated with Tiller Number in Rice Using QTL Analysis</title><author>Zhao, Dan-Dan ; 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Tiller numbers were recorded every 7 days a total of nine times, starting 30 days after transplantation. Quantitative trait locus (QTL) based analysis on a set of double haploid population derivatives of a cross between the Cheongcheong and Nagdong varieties identified a major effect of locus RM18130-RM3381 on chromosome 5, which was expressed in eight different growth stages. Within the target region RM18130-RM3381 (physical distance: 2.08 Mb), 61 candidate genes were screened by annotation. Among the candidate genes,
(named
), which belongs to the family of auxin-responsive genes, was selected as a target. Auxin promotes cell division and meristem maintenance and is an effective plant regulator which influences plant growth and development by altering the expression of various genes.
is expected to control the number of tillers. The present study provides further understanding of the basic genetic mechanisms that selectively express the control of tiller numbers in different growth stages, as well as provides valuable information for future research aimed at cloning the target gene. These results may contribute to developing a comprehensive understanding of the basic genetic processes regulating the developmental behavior of tiller numbers in rice.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>35214873</pmid><doi>10.3390/plants11040538</doi><orcidid>https://orcid.org/0000-0003-4812-6297</orcidid><orcidid>https://orcid.org/0000-0003-2207-5313</orcidid><orcidid>https://orcid.org/0000-0002-9898-2262</orcidid><orcidid>https://orcid.org/0000-0002-8532-608X</orcidid><orcidid>https://orcid.org/0000-0003-0294-6740</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | Plants (Basel), 2022-02, Vol.11 (4), p.538 |
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| source | Open Access: PubMed Central; Publicly Available Content (ProQuest) |
| subjects | Agricultural production Annotations auxin Auxins Cell division Chromosome 5 Chromosomes Cloning Gene expression Gene mapping Genes growth stage Heredity Meristems Plant growth Population Quantitative genetics Quantitative trait loci quantitative trait locus Rice rice yield Signal transduction tiller number Tillers Transplantation |
| title | Identification of One Major QTL and a Novel Gene OsIAA17q5 Associated with Tiller Number in Rice Using QTL Analysis |
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