Rational design of an acidic erythritol (ACER) medium for the enhanced isolation of the environmental pathogen Burkholderia pseudomallei from soil samples

• Published in: Frontiers in microbiology 2023-06, Vol.14, p.1213818-1213818
• Main Authors: Assig, Karoline, Lichtenegger, Sabine, Bui, Linh N H, Mosbacher, Bettina, Vu, Anh T N, Erhart, Daniel, Trinh, Trung T, Steinmetz, Ivo
• Format: Article
• Language: English
• Subjects: Burkholderia pseudomallei; culture medium; detection; environment; Microbiology; soil
• ISSN: 1664-302X; 1664-302X
• DOI: 10.3389/fmicb.2023.1213818

The soil bacterium causes melioidosis, a potentially fatal and greatly underdiagnosed tropical disease. Detection of in the environment is important to trace the source of infections, define risk areas for melioidosis and increase the clinical awareness. Although polymerase chain reaction (PCR)-based environmental detection provides important information, the culture of the pathogen remains essential but is still a methodological challenge. can catabolize erythritol, a metabolic pathway, which is otherwise rarely encountered among bacteria. We recently demonstrated that replacing threonine with erythritol as a single carbon source in the pH-neutral threonine-basal salt solution (TBSS-C50) historically used improved the isolation of from rice paddy soils. However, further culture medium parameters for an optimized recovery of strains from soils are still ill-defined. We, therefore, aimed to design a new erythritol-based medium by systematically optimizing parameters such as pH, buffer capacity, salt and nutrient composition. A key finding of our study is the enhanced erythritol-based growth of under acidic medium conditions. Our experiments with strains from different geographical origin led to the development of a phosphate-buffered acidic erythritol (ACER) medium with a pH of 6.3, higher erythritol concentration of 1.2%, supplemented vitamins and nitrate. This highly selective medium composition shortened the lag phase of cultures and greatly increased growth densities compared to TBSS-C50 and TBSS-C50-based erythritol medium. The ACER medium led to the highest enrichments of as determined from culture supernatants by quantitative PCR in a comparative validation with soil samples from the central part of Vietnam. Consequently, the median recovery of colony forming units on Ashdown's agar from ACER subcultures was 5.4 times higher compared to TBSS-C50-based erythritol medium (  = 0.005) and 30.7 times higher than TBSS-C50 (