Loading…

Characterization of the microRNA408-LACCASE5 module as a regulatory axis for photosynthetic efficiency in Medicago ruthenica : implications for forage yield enhancement

is closely related to a commonly cultivated forage. Characterized by its high tolerance to environmental stress, is a valuable genetic resource. However, low yield limits its large-scale utilization. Leaf morphology, an important agronomic trait, is closely related to forage yield and photosynthetic...

Full description

Saved in:
Bibliographic Details
Published in:Frontiers in genetics 2023-11, Vol.14, p.1295222-1295222
Main Authors: Zhang, Yutong, Yan, Wei, Qiao, Yu, Gao, Xia, Tang, Fang, Gao, Cuiping, Shi, Fengling
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites cdi_FETCH-LOGICAL-c420t-460a9a97fd21fcd30a4ba7c6532b5d43797bde3d2a555fb3709fe42b9e0453563
container_end_page 1295222
container_issue
container_start_page 1295222
container_title Frontiers in genetics
container_volume 14
creator Zhang, Yutong
Yan, Wei
Qiao, Yu
Gao, Xia
Tang, Fang
Gao, Cuiping
Shi, Fengling
description is closely related to a commonly cultivated forage. Characterized by its high tolerance to environmental stress, is a valuable genetic resource. However, low yield limits its large-scale utilization. Leaf morphology, an important agronomic trait, is closely related to forage yield and photosynthetic efficiency. In the presented study, "Correlation of Leaf Morphology and Photosynthetic Performance with Forage Yield in : The Underlying Molecular Mechanisms," comprehensive data analysis revealed a significant positive association between leaf width and leaf area with forage yield in ( < 0.05). The specific cultivar "Mengnong No.1 (MN No.1) had a large leaf area, and its physiological parameters related to photosynthetic characteristics were superior. Anatomical examination revealed that the leaves of MN No.1 had strong palisade tissue and compact cell structure. Subsequent investigations, utilizing small RNA and transcriptome sequencing, discerned critical miRNA-target gene networks that underpin the high photosynthetic efficiency in . A total of 63 differentially expressed miRNAs (DEMs) were identified, inclusive of several well-characterized miRNAs such as miR408, miR171, and miR398. These miRNAs were predicted to target 55 genes (mRNAs), of which 6 miRNA-target gene pairs, particularly those involving miR408and miR171, exhibited inverse expression patterns. Among the six postulated miRNA-target gene pairs, the targeted cleavage of LACCASE5 ( ) by miR408 was conclusively validated through degradome sequencing, with the cleavage site pinpointed between the 9th and 10th nucleotides from the 5'end of miR408 via the 5'-RLM-RACE assay. Therefore, it is posited that the miR408- module constitutes a central mechanism in fostering high photosynthetic efficiency in . Moreover, these findings also provide valuable information for further study of the regulatory genes and miRNA functions of forage yield in legume forage.
doi_str_mv 10.3389/fgene.2023.1295222
format article
fullrecord <record><control><sourceid>proquest_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_d9ac7d252c524dedb492ccadc4607e45</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_d9ac7d252c524dedb492ccadc4607e45</doaj_id><sourcerecordid>2902965513</sourcerecordid><originalsourceid>FETCH-LOGICAL-c420t-460a9a97fd21fcd30a4ba7c6532b5d43797bde3d2a555fb3709fe42b9e0453563</originalsourceid><addsrcrecordid>eNpVktuO0zAQhiMEYldlX4AL5EtuWhwfkpobVFULrFRA4nBtTexJ6lViFztBhCfiMXG3ZbVryfJoDt_MyH9RvCzpivO1etN26HHFKOOrkinJGHtSXJZVJZZrysqnD-yL4iqlW5qPUJxz8by44GuqaCnlZfF3u4cIZsTo_sDogiehJeMeyeBMDF8_bwRdL3eb7Xbz7VqSIdipRwKJAInYTT2MIc4EfrtE2hDJYR_GkGafAaMzBNvWGYfezMR58gmtM9AFEqcc99kmb4kbDn22jp1PiHyhQzI77C1BvwdvcEA_viietdAnvDq_i-LH--vv24_L3ZcPN9vNbmkEo-NSVBQUqLq1rGyN5RREA7WpJGeNtILXqm4scstAStk2vKaqRcEahVRILiu-KG5OXBvgVh-iGyDOOoDTd44QOw0xL9ejtgpMbZlkRjJh0TZCMWPAmjxEjRm3KN6dWIepGdCavEaE_hH0ccS7ve7CL13SuuQ1F5nw-kyI4eeEadSDSwb7HjyGKWmmKFOVlCXPqeyUmv8tpYjtfZ-S6qNk9J1k9FEy-iyZXPTq4YT3Jf8Fwv8BGpHBMQ</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2902965513</pqid></control><display><type>article</type><title>Characterization of the microRNA408-LACCASE5 module as a regulatory axis for photosynthetic efficiency in Medicago ruthenica : implications for forage yield enhancement</title><source>Open Access: PubMed Central</source><creator>Zhang, Yutong ; Yan, Wei ; Qiao, Yu ; Gao, Xia ; Tang, Fang ; Gao, Cuiping ; Shi, Fengling</creator><creatorcontrib>Zhang, Yutong ; Yan, Wei ; Qiao, Yu ; Gao, Xia ; Tang, Fang ; Gao, Cuiping ; Shi, Fengling</creatorcontrib><description>is closely related to a commonly cultivated forage. Characterized by its high tolerance to environmental stress, is a valuable genetic resource. However, low yield limits its large-scale utilization. Leaf morphology, an important agronomic trait, is closely related to forage yield and photosynthetic efficiency. In the presented study, "Correlation of Leaf Morphology and Photosynthetic Performance with Forage Yield in : The Underlying Molecular Mechanisms," comprehensive data analysis revealed a significant positive association between leaf width and leaf area with forage yield in ( &lt; 0.05). The specific cultivar "Mengnong No.1 (MN No.1) had a large leaf area, and its physiological parameters related to photosynthetic characteristics were superior. Anatomical examination revealed that the leaves of MN No.1 had strong palisade tissue and compact cell structure. Subsequent investigations, utilizing small RNA and transcriptome sequencing, discerned critical miRNA-target gene networks that underpin the high photosynthetic efficiency in . A total of 63 differentially expressed miRNAs (DEMs) were identified, inclusive of several well-characterized miRNAs such as miR408, miR171, and miR398. These miRNAs were predicted to target 55 genes (mRNAs), of which 6 miRNA-target gene pairs, particularly those involving miR408and miR171, exhibited inverse expression patterns. Among the six postulated miRNA-target gene pairs, the targeted cleavage of LACCASE5 ( ) by miR408 was conclusively validated through degradome sequencing, with the cleavage site pinpointed between the 9th and 10th nucleotides from the 5'end of miR408 via the 5'-RLM-RACE assay. Therefore, it is posited that the miR408- module constitutes a central mechanism in fostering high photosynthetic efficiency in . Moreover, these findings also provide valuable information for further study of the regulatory genes and miRNA functions of forage yield in legume forage.</description><identifier>ISSN: 1664-8021</identifier><identifier>EISSN: 1664-8021</identifier><identifier>DOI: 10.3389/fgene.2023.1295222</identifier><identifier>PMID: 38090155</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>Genetics ; leaf morphology ; Medicago ruthenica ; photosynthetic efficiency ; sequencing ; yield formation</subject><ispartof>Frontiers in genetics, 2023-11, Vol.14, p.1295222-1295222</ispartof><rights>Copyright © 2023 Zhang, Yan, Qiao, Gao, Tang, Gao and Shi.</rights><rights>Copyright © 2023 Zhang, Yan, Qiao, Gao, Tang, Gao and Shi. 2023 Zhang, Yan, Qiao, Gao, Tang, Gao and Shi</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c420t-460a9a97fd21fcd30a4ba7c6532b5d43797bde3d2a555fb3709fe42b9e0453563</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10713734/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10713734/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27923,27924,53790,53792</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38090155$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhang, Yutong</creatorcontrib><creatorcontrib>Yan, Wei</creatorcontrib><creatorcontrib>Qiao, Yu</creatorcontrib><creatorcontrib>Gao, Xia</creatorcontrib><creatorcontrib>Tang, Fang</creatorcontrib><creatorcontrib>Gao, Cuiping</creatorcontrib><creatorcontrib>Shi, Fengling</creatorcontrib><title>Characterization of the microRNA408-LACCASE5 module as a regulatory axis for photosynthetic efficiency in Medicago ruthenica : implications for forage yield enhancement</title><title>Frontiers in genetics</title><addtitle>Front Genet</addtitle><description>is closely related to a commonly cultivated forage. Characterized by its high tolerance to environmental stress, is a valuable genetic resource. However, low yield limits its large-scale utilization. Leaf morphology, an important agronomic trait, is closely related to forage yield and photosynthetic efficiency. In the presented study, "Correlation of Leaf Morphology and Photosynthetic Performance with Forage Yield in : The Underlying Molecular Mechanisms," comprehensive data analysis revealed a significant positive association between leaf width and leaf area with forage yield in ( &lt; 0.05). The specific cultivar "Mengnong No.1 (MN No.1) had a large leaf area, and its physiological parameters related to photosynthetic characteristics were superior. Anatomical examination revealed that the leaves of MN No.1 had strong palisade tissue and compact cell structure. Subsequent investigations, utilizing small RNA and transcriptome sequencing, discerned critical miRNA-target gene networks that underpin the high photosynthetic efficiency in . A total of 63 differentially expressed miRNAs (DEMs) were identified, inclusive of several well-characterized miRNAs such as miR408, miR171, and miR398. These miRNAs were predicted to target 55 genes (mRNAs), of which 6 miRNA-target gene pairs, particularly those involving miR408and miR171, exhibited inverse expression patterns. Among the six postulated miRNA-target gene pairs, the targeted cleavage of LACCASE5 ( ) by miR408 was conclusively validated through degradome sequencing, with the cleavage site pinpointed between the 9th and 10th nucleotides from the 5'end of miR408 via the 5'-RLM-RACE assay. Therefore, it is posited that the miR408- module constitutes a central mechanism in fostering high photosynthetic efficiency in . Moreover, these findings also provide valuable information for further study of the regulatory genes and miRNA functions of forage yield in legume forage.</description><subject>Genetics</subject><subject>leaf morphology</subject><subject>Medicago ruthenica</subject><subject>photosynthetic efficiency</subject><subject>sequencing</subject><subject>yield formation</subject><issn>1664-8021</issn><issn>1664-8021</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVktuO0zAQhiMEYldlX4AL5EtuWhwfkpobVFULrFRA4nBtTexJ6lViFztBhCfiMXG3ZbVryfJoDt_MyH9RvCzpivO1etN26HHFKOOrkinJGHtSXJZVJZZrysqnD-yL4iqlW5qPUJxz8by44GuqaCnlZfF3u4cIZsTo_sDogiehJeMeyeBMDF8_bwRdL3eb7Xbz7VqSIdipRwKJAInYTT2MIc4EfrtE2hDJYR_GkGafAaMzBNvWGYfezMR58gmtM9AFEqcc99kmb4kbDn22jp1PiHyhQzI77C1BvwdvcEA_viietdAnvDq_i-LH--vv24_L3ZcPN9vNbmkEo-NSVBQUqLq1rGyN5RREA7WpJGeNtILXqm4scstAStk2vKaqRcEahVRILiu-KG5OXBvgVh-iGyDOOoDTd44QOw0xL9ejtgpMbZlkRjJh0TZCMWPAmjxEjRm3KN6dWIepGdCavEaE_hH0ccS7ve7CL13SuuQ1F5nw-kyI4eeEadSDSwb7HjyGKWmmKFOVlCXPqeyUmv8tpYjtfZ-S6qNk9J1k9FEy-iyZXPTq4YT3Jf8Fwv8BGpHBMQ</recordid><startdate>20231128</startdate><enddate>20231128</enddate><creator>Zhang, Yutong</creator><creator>Yan, Wei</creator><creator>Qiao, Yu</creator><creator>Gao, Xia</creator><creator>Tang, Fang</creator><creator>Gao, Cuiping</creator><creator>Shi, Fengling</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20231128</creationdate><title>Characterization of the microRNA408-LACCASE5 module as a regulatory axis for photosynthetic efficiency in Medicago ruthenica : implications for forage yield enhancement</title><author>Zhang, Yutong ; Yan, Wei ; Qiao, Yu ; Gao, Xia ; Tang, Fang ; Gao, Cuiping ; Shi, Fengling</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c420t-460a9a97fd21fcd30a4ba7c6532b5d43797bde3d2a555fb3709fe42b9e0453563</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Genetics</topic><topic>leaf morphology</topic><topic>Medicago ruthenica</topic><topic>photosynthetic efficiency</topic><topic>sequencing</topic><topic>yield formation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zhang, Yutong</creatorcontrib><creatorcontrib>Yan, Wei</creatorcontrib><creatorcontrib>Qiao, Yu</creatorcontrib><creatorcontrib>Gao, Xia</creatorcontrib><creatorcontrib>Tang, Fang</creatorcontrib><creatorcontrib>Gao, Cuiping</creatorcontrib><creatorcontrib>Shi, Fengling</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Frontiers in genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhang, Yutong</au><au>Yan, Wei</au><au>Qiao, Yu</au><au>Gao, Xia</au><au>Tang, Fang</au><au>Gao, Cuiping</au><au>Shi, Fengling</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization of the microRNA408-LACCASE5 module as a regulatory axis for photosynthetic efficiency in Medicago ruthenica : implications for forage yield enhancement</atitle><jtitle>Frontiers in genetics</jtitle><addtitle>Front Genet</addtitle><date>2023-11-28</date><risdate>2023</risdate><volume>14</volume><spage>1295222</spage><epage>1295222</epage><pages>1295222-1295222</pages><issn>1664-8021</issn><eissn>1664-8021</eissn><abstract>is closely related to a commonly cultivated forage. Characterized by its high tolerance to environmental stress, is a valuable genetic resource. However, low yield limits its large-scale utilization. Leaf morphology, an important agronomic trait, is closely related to forage yield and photosynthetic efficiency. In the presented study, "Correlation of Leaf Morphology and Photosynthetic Performance with Forage Yield in : The Underlying Molecular Mechanisms," comprehensive data analysis revealed a significant positive association between leaf width and leaf area with forage yield in ( &lt; 0.05). The specific cultivar "Mengnong No.1 (MN No.1) had a large leaf area, and its physiological parameters related to photosynthetic characteristics were superior. Anatomical examination revealed that the leaves of MN No.1 had strong palisade tissue and compact cell structure. Subsequent investigations, utilizing small RNA and transcriptome sequencing, discerned critical miRNA-target gene networks that underpin the high photosynthetic efficiency in . A total of 63 differentially expressed miRNAs (DEMs) were identified, inclusive of several well-characterized miRNAs such as miR408, miR171, and miR398. These miRNAs were predicted to target 55 genes (mRNAs), of which 6 miRNA-target gene pairs, particularly those involving miR408and miR171, exhibited inverse expression patterns. Among the six postulated miRNA-target gene pairs, the targeted cleavage of LACCASE5 ( ) by miR408 was conclusively validated through degradome sequencing, with the cleavage site pinpointed between the 9th and 10th nucleotides from the 5'end of miR408 via the 5'-RLM-RACE assay. Therefore, it is posited that the miR408- module constitutes a central mechanism in fostering high photosynthetic efficiency in . Moreover, these findings also provide valuable information for further study of the regulatory genes and miRNA functions of forage yield in legume forage.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>38090155</pmid><doi>10.3389/fgene.2023.1295222</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1664-8021
ispartof Frontiers in genetics, 2023-11, Vol.14, p.1295222-1295222
issn 1664-8021
1664-8021
language eng
recordid cdi_doaj_primary_oai_doaj_org_article_d9ac7d252c524dedb492ccadc4607e45
source Open Access: PubMed Central
subjects Genetics
leaf morphology
Medicago ruthenica
photosynthetic efficiency
sequencing
yield formation
title Characterization of the microRNA408-LACCASE5 module as a regulatory axis for photosynthetic efficiency in Medicago ruthenica : implications for forage yield enhancement
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-08T20%3A33%3A45IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_doaj_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Characterization%20of%20the%20microRNA408-LACCASE5%20module%20as%20a%20regulatory%20axis%20for%20photosynthetic%20efficiency%20in%20Medicago%20ruthenica%20:%20implications%20for%20forage%20yield%20enhancement&rft.jtitle=Frontiers%20in%20genetics&rft.au=Zhang,%20Yutong&rft.date=2023-11-28&rft.volume=14&rft.spage=1295222&rft.epage=1295222&rft.pages=1295222-1295222&rft.issn=1664-8021&rft.eissn=1664-8021&rft_id=info:doi/10.3389/fgene.2023.1295222&rft_dat=%3Cproquest_doaj_%3E2902965513%3C/proquest_doaj_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c420t-460a9a97fd21fcd30a4ba7c6532b5d43797bde3d2a555fb3709fe42b9e0453563%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2902965513&rft_id=info:pmid/38090155&rfr_iscdi=true