Loading…
Multiple phase transitions in an agent-based evolutionary model with neutral fitness
Null models are crucial for understanding evolutionary processes such as speciation and adaptive radiation. We analyse an agent-based null model, considering a case without selection—neutral evolution—in which organisms are defined only by phenotype. Universal dynamics has previously been demonstrat...
Saved in:
Published in: | Royal Society open science 2017-04, Vol.4 (4), p.170005-170005 |
---|---|
Main Authors: | , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites Items that cite this one |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | cdi_FETCH-LOGICAL-c572t-31d331ebdca14d194d942ba9cdc8d074f973a341a3e9d885cafde97965c386333 |
---|---|
cites | cdi_FETCH-LOGICAL-c572t-31d331ebdca14d194d942ba9cdc8d074f973a341a3e9d885cafde97965c386333 |
container_end_page | 170005 |
container_issue | 4 |
container_start_page | 170005 |
container_title | Royal Society open science |
container_volume | 4 |
creator | King, Dawn M. Scott, Adam D. Bahar, Sonya |
description | Null models are crucial for understanding evolutionary processes such as speciation and adaptive radiation. We analyse an agent-based null model, considering a case without selection—neutral evolution—in which organisms are defined only by phenotype. Universal dynamics has previously been demonstrated in a related model on a neutral fitness landscape, showing that this system belongs to the directed percolation (DP) universality class. The traditional null condition of neutral fitness (where fitness is defined as the number of offspring each organism produces) is extended here to include equal probability of death among organisms. We identify two types of phase transition: (i) a non-equilibrium DP transition through generational time (i.e. survival), and (ii) an equilibrium ordinary percolation transition through the phenotype space (based on links between mating organisms). Owing to the dynamical rules of the DP reaction–diffusion process, organisms can only sparsely fill the phenotype space, resulting in significant phenotypic diversity within a cluster of mating organisms. This highlights the necessity of understanding hierarchical evolutionary relationships, rather than merely developing taxonomies based on phenotypic similarity, in order to develop models that can explain phylogenetic patterns found in the fossil record or to make hypotheses for the incomplete fossil record of deep time. |
doi_str_mv | 10.1098/rsos.170005 |
format | article |
fullrecord | <record><control><sourceid>proquest_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_dc21228b7d5545c0bf5ae5771b5007f1</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_dc21228b7d5545c0bf5ae5771b5007f1</doaj_id><sourcerecordid>1896898325</sourcerecordid><originalsourceid>FETCH-LOGICAL-c572t-31d331ebdca14d194d942ba9cdc8d074f973a341a3e9d885cafde97965c386333</originalsourceid><addsrcrecordid>eNp9UV1rFDEUHUSxpfbJd5lHQabmc5K8CFKqLVQKtj75EDLJnd0ss5M1yaysv75Zp5atiBC4Sc7JOffmVNVrjM4wUvJ9TCGdYYEQ4s-qY4I4a7hA9PnB_qg6TWlVGJgjKlrxsjoikknWEnVc3X2Zhuw3A9SbpUlQ52jG5LMPY6r9WJuyFjDmpiugq2EbhmkPmrir18HBUP_0eVmPMJWHQ937PEJKr6oXvRkSnD7Uk-rbp4u788vm-ubz1fnH68ZyQXJDsaMUQ-eswcxhxZxipDPKOisdEqxXghrKsKGgnJTcmt6BEqrllsqWUnpSXc26LpiV3kS_Ln3pYLz-fRHiQpuYvR1AO0swIbITjnPGLep6boALgTuOkOhx0fowa22mbg3OlqHLRE9EnyKjX-pF2GrOMCNtWwTePgjE8GOClPXaJwvDYEYIU9JYqlYqSQkv1Hcz1caQUoT-0QYjvY9V72PVc6yF_eaws0funxAL4ftMiGFXvjtYD3mnV2GKYznqr7c3t1vmmUaSYiQwwlj_8pvZg2mf0gSlHlj-ZY_-p_6vju8BFDTP2A</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1896898325</pqid></control><display><type>article</type><title>Multiple phase transitions in an agent-based evolutionary model with neutral fitness</title><source>PubMed Central(OpenAccess)</source><source>Royal Society Open Access Journals</source><creator>King, Dawn M. ; Scott, Adam D. ; Bahar, Sonya</creator><creatorcontrib>King, Dawn M. ; Scott, Adam D. ; Bahar, Sonya</creatorcontrib><description>Null models are crucial for understanding evolutionary processes such as speciation and adaptive radiation. We analyse an agent-based null model, considering a case without selection—neutral evolution—in which organisms are defined only by phenotype. Universal dynamics has previously been demonstrated in a related model on a neutral fitness landscape, showing that this system belongs to the directed percolation (DP) universality class. The traditional null condition of neutral fitness (where fitness is defined as the number of offspring each organism produces) is extended here to include equal probability of death among organisms. We identify two types of phase transition: (i) a non-equilibrium DP transition through generational time (i.e. survival), and (ii) an equilibrium ordinary percolation transition through the phenotype space (based on links between mating organisms). Owing to the dynamical rules of the DP reaction–diffusion process, organisms can only sparsely fill the phenotype space, resulting in significant phenotypic diversity within a cluster of mating organisms. This highlights the necessity of understanding hierarchical evolutionary relationships, rather than merely developing taxonomies based on phenotypic similarity, in order to develop models that can explain phylogenetic patterns found in the fossil record or to make hypotheses for the incomplete fossil record of deep time.</description><identifier>ISSN: 2054-5703</identifier><identifier>EISSN: 2054-5703</identifier><identifier>DOI: 10.1098/rsos.170005</identifier><identifier>PMID: 28484629</identifier><language>eng</language><publisher>England: The Royal Society Publishing</publisher><subject>Agent-Based Model ; Clustering ; Extinction ; Neutral Theory ; Phase Transition ; Physics ; Speciation</subject><ispartof>Royal Society open science, 2017-04, Vol.4 (4), p.170005-170005</ispartof><rights>2017 The Authors.</rights><rights>2017 The Authors. 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c572t-31d331ebdca14d194d942ba9cdc8d074f973a341a3e9d885cafde97965c386333</citedby><cites>FETCH-LOGICAL-c572t-31d331ebdca14d194d942ba9cdc8d074f973a341a3e9d885cafde97965c386333</cites><orcidid>0000-0002-3665-3746</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414266/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5414266/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,882,3309,27128,27905,27906,53772,53774,55536,55546</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28484629$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>King, Dawn M.</creatorcontrib><creatorcontrib>Scott, Adam D.</creatorcontrib><creatorcontrib>Bahar, Sonya</creatorcontrib><title>Multiple phase transitions in an agent-based evolutionary model with neutral fitness</title><title>Royal Society open science</title><addtitle>R. Soc. open sci</addtitle><addtitle>R Soc Open Sci</addtitle><description>Null models are crucial for understanding evolutionary processes such as speciation and adaptive radiation. We analyse an agent-based null model, considering a case without selection—neutral evolution—in which organisms are defined only by phenotype. Universal dynamics has previously been demonstrated in a related model on a neutral fitness landscape, showing that this system belongs to the directed percolation (DP) universality class. The traditional null condition of neutral fitness (where fitness is defined as the number of offspring each organism produces) is extended here to include equal probability of death among organisms. We identify two types of phase transition: (i) a non-equilibrium DP transition through generational time (i.e. survival), and (ii) an equilibrium ordinary percolation transition through the phenotype space (based on links between mating organisms). Owing to the dynamical rules of the DP reaction–diffusion process, organisms can only sparsely fill the phenotype space, resulting in significant phenotypic diversity within a cluster of mating organisms. This highlights the necessity of understanding hierarchical evolutionary relationships, rather than merely developing taxonomies based on phenotypic similarity, in order to develop models that can explain phylogenetic patterns found in the fossil record or to make hypotheses for the incomplete fossil record of deep time.</description><subject>Agent-Based Model</subject><subject>Clustering</subject><subject>Extinction</subject><subject>Neutral Theory</subject><subject>Phase Transition</subject><subject>Physics</subject><subject>Speciation</subject><issn>2054-5703</issn><issn>2054-5703</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNp9UV1rFDEUHUSxpfbJd5lHQabmc5K8CFKqLVQKtj75EDLJnd0ss5M1yaysv75Zp5atiBC4Sc7JOffmVNVrjM4wUvJ9TCGdYYEQ4s-qY4I4a7hA9PnB_qg6TWlVGJgjKlrxsjoikknWEnVc3X2Zhuw3A9SbpUlQ52jG5LMPY6r9WJuyFjDmpiugq2EbhmkPmrir18HBUP_0eVmPMJWHQ937PEJKr6oXvRkSnD7Uk-rbp4u788vm-ubz1fnH68ZyQXJDsaMUQ-eswcxhxZxipDPKOisdEqxXghrKsKGgnJTcmt6BEqrllsqWUnpSXc26LpiV3kS_Ln3pYLz-fRHiQpuYvR1AO0swIbITjnPGLep6boALgTuOkOhx0fowa22mbg3OlqHLRE9EnyKjX-pF2GrOMCNtWwTePgjE8GOClPXaJwvDYEYIU9JYqlYqSQkv1Hcz1caQUoT-0QYjvY9V72PVc6yF_eaws0funxAL4ftMiGFXvjtYD3mnV2GKYznqr7c3t1vmmUaSYiQwwlj_8pvZg2mf0gSlHlj-ZY_-p_6vju8BFDTP2A</recordid><startdate>20170401</startdate><enddate>20170401</enddate><creator>King, Dawn M.</creator><creator>Scott, Adam D.</creator><creator>Bahar, Sonya</creator><general>The Royal Society Publishing</general><general>The Royal Society</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-3665-3746</orcidid></search><sort><creationdate>20170401</creationdate><title>Multiple phase transitions in an agent-based evolutionary model with neutral fitness</title><author>King, Dawn M. ; Scott, Adam D. ; Bahar, Sonya</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c572t-31d331ebdca14d194d942ba9cdc8d074f973a341a3e9d885cafde97965c386333</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Agent-Based Model</topic><topic>Clustering</topic><topic>Extinction</topic><topic>Neutral Theory</topic><topic>Phase Transition</topic><topic>Physics</topic><topic>Speciation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>King, Dawn M.</creatorcontrib><creatorcontrib>Scott, Adam D.</creatorcontrib><creatorcontrib>Bahar, Sonya</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Royal Society open science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>King, Dawn M.</au><au>Scott, Adam D.</au><au>Bahar, Sonya</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Multiple phase transitions in an agent-based evolutionary model with neutral fitness</atitle><jtitle>Royal Society open science</jtitle><stitle>R. Soc. open sci</stitle><addtitle>R Soc Open Sci</addtitle><date>2017-04-01</date><risdate>2017</risdate><volume>4</volume><issue>4</issue><spage>170005</spage><epage>170005</epage><pages>170005-170005</pages><issn>2054-5703</issn><eissn>2054-5703</eissn><abstract>Null models are crucial for understanding evolutionary processes such as speciation and adaptive radiation. We analyse an agent-based null model, considering a case without selection—neutral evolution—in which organisms are defined only by phenotype. Universal dynamics has previously been demonstrated in a related model on a neutral fitness landscape, showing that this system belongs to the directed percolation (DP) universality class. The traditional null condition of neutral fitness (where fitness is defined as the number of offspring each organism produces) is extended here to include equal probability of death among organisms. We identify two types of phase transition: (i) a non-equilibrium DP transition through generational time (i.e. survival), and (ii) an equilibrium ordinary percolation transition through the phenotype space (based on links between mating organisms). Owing to the dynamical rules of the DP reaction–diffusion process, organisms can only sparsely fill the phenotype space, resulting in significant phenotypic diversity within a cluster of mating organisms. This highlights the necessity of understanding hierarchical evolutionary relationships, rather than merely developing taxonomies based on phenotypic similarity, in order to develop models that can explain phylogenetic patterns found in the fossil record or to make hypotheses for the incomplete fossil record of deep time.</abstract><cop>England</cop><pub>The Royal Society Publishing</pub><pmid>28484629</pmid><doi>10.1098/rsos.170005</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-3665-3746</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2054-5703 |
ispartof | Royal Society open science, 2017-04, Vol.4 (4), p.170005-170005 |
issn | 2054-5703 2054-5703 |
language | eng |
recordid | cdi_doaj_primary_oai_doaj_org_article_dc21228b7d5545c0bf5ae5771b5007f1 |
source | PubMed Central(OpenAccess); Royal Society Open Access Journals |
subjects | Agent-Based Model Clustering Extinction Neutral Theory Phase Transition Physics Speciation |
title | Multiple phase transitions in an agent-based evolutionary model with neutral fitness |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-17T16%3A59%3A08IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_doaj_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Multiple%20phase%20transitions%20in%20an%20agent-based%20evolutionary%20model%20with%20neutral%20fitness&rft.jtitle=Royal%20Society%20open%20science&rft.au=King,%20Dawn%20M.&rft.date=2017-04-01&rft.volume=4&rft.issue=4&rft.spage=170005&rft.epage=170005&rft.pages=170005-170005&rft.issn=2054-5703&rft.eissn=2054-5703&rft_id=info:doi/10.1098/rsos.170005&rft_dat=%3Cproquest_doaj_%3E1896898325%3C/proquest_doaj_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c572t-31d331ebdca14d194d942ba9cdc8d074f973a341a3e9d885cafde97965c386333%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1896898325&rft_id=info:pmid/28484629&rfr_iscdi=true |