Characterization of Streptococcus pneumoniae serotype 19F-variants occurring in Brazil uncovers a predominant lineage that can lead to misinterpretation in capsular typing

• Published in: International journal of infectious diseases 2021-03, Vol.104, p.580-583
• Main Authors: Oliveira, Laura M.A., Souza, Aline R.V., Pinto, Tatiana C.A., Teixeira, Lucia M.
• Format: Article
• Language: English
• Subjects: Multilocus sequence typing; Pneumococcal capsular locus; Serotype 19F-variant; Streptococcus pneumoniae; wzy sequence variant
• ISSN: 1201-9712; 1878-3511
• DOI: 10.1016/j.ijid.2021.01.030

[Display omitted] •Streptococcus pneumoniae 19F-variants detected worldwide are genetically unrelated.•Streptococcus pneumoniae wzy19F variants seem to be clonally spread within a country.•The wzy19F variant isolates identified until now in Brazil have belonged to CC810.•CC810 wzy19F variant isolates have been circulating in Brazil since 1989. Streptococcus pneumoniae (S. pneumoniae) of serogroup 19 are mainly represented by serotypes 19A and 19F, which are associated with antimicrobial resistance and disease. The wzy gene, a component of the pneumococcal capsular locus, is the target to differentiate serotypes 19A and 19F by PCR-based capsular typing. In the last decade, allelic variants of the wzy19F gene have been described, leading to misinterpretation of capsular typing results. A collection of 154 serotype 19F S. pneumoniae strains recovered from carriage and disease in Brazil was evaluated to identify and characterize wzy19F variant isolates. Eleven (7%) wzy19F variant isolates were detected and identified as belonging to ST810 (n = 10) or ST13673 (n = 1; single-locus variant of ST810). They were mostly recovered from diseased patients, susceptible to the antimicrobial agents tested (except for one multidrug-resistant strain) and did not harbor pili genes. Sequences of the wzy19F gene of these variants were identical to each other and to those previously described in Brazil, but slightly different from wzy19F variants identified in other countries. This study indicated that wzy19F variants present a geographically driven distribution and was the first to uncover phenotypic and genetic features of a wzy19F variant lineage occurring in Brazil since 1989.