Metabolomics and transcriptomics of embryonic livers reveal hypoxia adaptation of Tibetan chickens

• Published in: BMC genomics 2024-02, Vol.25 (1), p.131-131, Article 131
• Main Authors: Xue, Mingming, Yu, Runjie, Yang, Lixian, Xie, Fuyin, Fang, Meiying, Tang, Qiguo
• Format: Article
• Language: English
• Subjects: Adaptation; Adaptation (Physiology); Altitude; Amino acids; Animal husbandry; Animal production; Biosynthesis; Chickens; Complications and side effects; Discriminant analysis; Embryogenesis; Embryonic development; Embryonic growth stage; Embryonic liver; Energy metabolism; Fatty acids; Gene expression; Genetic aspects; Health aspects; Hypoxia; Lipids; Liver; Mass spectrometry; Metabolic pathways; Metabolism; Metabolites; Metabolomics; Methods; Physiology; Poultry; RNA sequencing; Scientific imaging; Tibetan chickens; Transcriptomics; Tricarboxylic acid cycle
• ISSN: 1471-2164; 1471-2164
• DOI: 10.1186/s12864-024-10030-w

Exploring the hypoxia adaptation mechanism of Tibetan chicken is of great significance for revealing the survival law of Tibetan chicken and plateau animal husbandry production. To investigate the hypoxia adaptation of Tibetan chickens (TBCs), an integrative metabolomic-transcriptomic analysis of the liver on day 18 of embryonic development was performed. Dwarf laying chickens (DLCs), a lowland breed, were used as a control. A total of 1,908 metabolites were identified in both TBCs and DLCs. Energy metabolism and amino acid metabolism related differentially regulated metabolites (DRMs) were significantly enriched under hypoxia. Important metabolic pathways including the TCA cycle and arginine and proline metabolism were screened; PCK1, SUCLA2, and CPS1 were found to be altered under hypoxic conditions. In addition, integrated analysis suggested potential differences in mitochondrial function, which may play a crucial role in the study of chicken oxygen adaptation. These results suggest that hypoxia changed the gene expression and metabolic patterns of embryonic liver of TBCs compared to DLCs. Our study provides a basis for uncovering the molecular regulation mechanisms of hypoxia adaptation in TBCs with the potential application of hypoxia adaptation research for other animals living on the Qinghai-Tibet plateau, and may even contribute to the study of diseases caused by hypoxia.