The prognostic value of an autophagy-related lncRNA signature in hepatocellular carcinoma

• Published in: BMC bioinformatics 2021-04, Vol.22 (1), p.217-217, Article 217
• Main Authors: Yang, Shiming, Zhou, Yaping, Zhang, Xiangxin, Wang, Lu, Fu, Jianfeng, Zhao, Xiaotong, Yang, Liu
• Format: Article
• Language: English
• Subjects: Autophagy; Autophagy-related lncRNAs; Biological activity; Biomarkers, Tumor - genetics; Carcinoma, Hepatocellular - genetics; Cell cycle; Chemical reactions; Child; Child, Preschool; Correlation analysis; Deoxyribonucleic acid; DNA; DNA biosynthesis; Gene expression; Hepatocellular carcinoma; Humans; Infant; Liver cancer; Liver Neoplasms - genetics; Medical prognosis; Metabolism; Metastases; Metastasis; mRNA; Nomograms; Patients; Performance evaluation; Phagocytosis; Prognosis; Proteins; Regression analysis; Ribonucleic acid; Risk groups; RNA; RNA transport; RNA, Long Noncoding - genetics; Signal transduction; Splicing; Survival; The Risk prediction model; Therapeutic targets; Tumors; Values
• ISSN: 1471-2105; 1471-2105
• DOI: 10.1186/s12859-021-04123-6

lncRNA may be involved in the occurrence, metastasis, and chemical reaction of hepatocellular carcinoma (HCC) through various pathways associated with autophagy. Therefore, it is urgent to reveal more autophagy-related lncRNAs, explore these lncRNAs' clinical significance, and find new targeted treatment strategies. The corresponding data of HCC patients and autophagy genes were obtained from the TCGA database, and the human autophagy database respectively. Based on the co-expression and Cox regression analysis to construct prognostic prediction signature. Finally, a signature containing seven autophagy-related lncRNAs (PRRT3-AS1, RP11-479G22.8, RP11-73M18.8, LINC01138, CTD-2510F5.4, CTC-297N7.9, RP11-324I22.4) was constructed. Based on the risk score of signature, Overall survival (OS) curves show that the OS of high-risk patients is significantly lower than that of low-risk patients (P = 2.292e-10), and the prognostic prediction accuracy of risk score (AUC = 0.786) is significantly higher than that of ALBI (0.532), child_pugh (0.573), AFP (0.5751), and AJCC_stage (0.631). Moreover, multivariate Cox analysis and Nomogram of risk score are indicated that the 1-year and 3-year survival rates of patients are obviously accuracy by the combined analysis of the risk score, child_pugh, age, M_stage, and Grade (The AUC of 1- and 3-years are 0.87, and 0.855). Remarkably, the 7 autophagy-related lncRNAs may participate in Spliceosome, Cell cycle, RNA transport, DNA replication, and mRNA surveillance pathway and be related to the biological process of RNA splicing and mRNA splicing. In conclusion, the 7 autophagy-related lncRNAs might be promising prognostic and therapeutic targets for HCC.