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Molecular characterization of an adiponectin receptor homolog in the white leg shrimp, Litopenaeus vannamei
Adiponectin (AdipoQ) and its receptors (AdipoRs) are strongly related to growth and development of skeletal muscle, as well as glucose and lipid metabolism in vertebrates. Herein we report the identification of the first full-length cDNA encoding an AdipoR homolog (Liv-AdipoR) from the decapod crust...
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creator | Kim, Ah Ran Alam, Md Jobaidul Yoon, Tae-Ho Lee, Soo Rin Park, Hyun Kim, Doo-Nam An, Doo-Hae Lee, Jae-Bong Lee, Chung Il Kim, Hyun-Woo |
description | Adiponectin (AdipoQ) and its receptors (AdipoRs) are strongly related to growth and development of skeletal muscle, as well as glucose and lipid metabolism in vertebrates. Herein we report the identification of the first full-length cDNA encoding an AdipoR homolog (Liv-AdipoR) from the decapod crustacean Litopenaeus vannamei using a combination of next generation sequencing (NGS) technology and bioinformatics analysis. The full-length Liv-AdipoR (1,245 bp) encoded a protein that exhibited the canonical seven transmembrane domains (7TMs) and the inversed topology that characterize members of the progestin and adipoQ receptor (PAQR) family. Based on the obtained sequence information, only a single orthologous AdipoR gene appears to exist in arthropods, whereas two paralogs, AdipoR1 and AdipoR2, have evolved in vertebrates. Transcriptional analysis suggested that the single Liv-AdipoR gene appears to serve the functions of two mammalian AdipoRs. At 72 h after injection of 50 pmol Liv-AdipoR dsRNA (340 bp) into L. vannamei thoracic muscle and deep abdominal muscle, transcription levels of Liv-AdipoR decreased by 93% and 97%, respectively. This confirmed optimal conditions for RNAi of Liv-AdipoR. Knockdown of Liv-AdipoR resulted in significant changes in the plasma levels of ammonia, 3-methylhistine, and ornithine, but not plasma glucose, suggesting that that Liv-AdipoR is important for maintaining muscle fibers. The chronic effect of Liv-AdipoR dsRNA injection was increased mortality. Transcriptomic analysis showed that 804 contigs were upregulated and 212 contigs were downregulated by the knockdown of Liv-AdipoR in deep abdominal muscle. The significantly upregulated genes were categorized as four main functional groups: RNA-editing and transcriptional regulators, molecular chaperones, metabolic regulators, and channel proteins. |
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Herein we report the identification of the first full-length cDNA encoding an AdipoR homolog (Liv-AdipoR) from the decapod crustacean Litopenaeus vannamei using a combination of next generation sequencing (NGS) technology and bioinformatics analysis. The full-length Liv-AdipoR (1,245 bp) encoded a protein that exhibited the canonical seven transmembrane domains (7TMs) and the inversed topology that characterize members of the progestin and adipoQ receptor (PAQR) family. Based on the obtained sequence information, only a single orthologous AdipoR gene appears to exist in arthropods, whereas two paralogs, AdipoR1 and AdipoR2, have evolved in vertebrates. Transcriptional analysis suggested that the single Liv-AdipoR gene appears to serve the functions of two mammalian AdipoRs. At 72 h after injection of 50 pmol Liv-AdipoR dsRNA (340 bp) into L. vannamei thoracic muscle and deep abdominal muscle, transcription levels of Liv-AdipoR decreased by 93% and 97%, respectively. This confirmed optimal conditions for RNAi of Liv-AdipoR. Knockdown of Liv-AdipoR resulted in significant changes in the plasma levels of ammonia, 3-methylhistine, and ornithine, but not plasma glucose, suggesting that that Liv-AdipoR is important for maintaining muscle fibers. The chronic effect of Liv-AdipoR dsRNA injection was increased mortality. Transcriptomic analysis showed that 804 contigs were upregulated and 212 contigs were downregulated by the knockdown of Liv-AdipoR in deep abdominal muscle. The significantly upregulated genes were categorized as four main functional groups: RNA-editing and transcriptional regulators, molecular chaperones, metabolic regulators, and channel proteins.</description><identifier>ISSN: 2167-8359</identifier><identifier>EISSN: 2167-8359</identifier><identifier>DOI: 10.7717/peerj.2221</identifier><identifier>PMID: 27478708</identifier><language>eng</language><publisher>United States: PeerJ. Ltd</publisher><subject>Adiponectin ; Adiponectin receptor ; Ammonia ; Analysis ; Aquaculture, Fisheries and Fish Science ; Bioinformatics ; Chaperones ; Cloning ; Crustacea ; Crustaceans ; Decapod crustacean ; Decapoda ; Double-stranded RNA ; Enzymes ; Fisheries ; Gene expression ; Genes ; Glucose metabolism ; GPCR ; Injection ; Kinases ; Lipid metabolism ; Litopenaeus vannamei ; Marine Biology ; Metabolism ; Molecular Biology ; Musculoskeletal system ; Ornithine ; Oxidation ; Physiology ; Plasma levels ; Progestin ; Proteins ; R&D ; Research & development ; Ribonucleic acid ; RNA ; RNA editing ; RNA-mediated interference ; RNAi ; Rodents ; Salinity ; Skeletal muscle ; Studies ; Thorax ; Transcription ; Transcription (Genetics) ; Transmembrane domains</subject><ispartof>PeerJ (San Francisco, CA), 2016-07, Vol.4, p.e2221-e2221, Article e2221</ispartof><rights>COPYRIGHT 2016 PeerJ. Ltd.</rights><rights>2016 Kim et al. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2016 Kim et al. 2016 Kim et al.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c570t-bc422dd1745dc8da15eb630a18eec40f92a59edd70bfb7c5065bfbab0e996c5e3</citedby><cites>FETCH-LOGICAL-c570t-bc422dd1745dc8da15eb630a18eec40f92a59edd70bfb7c5065bfbab0e996c5e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/1953850160/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/1953850160?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27478708$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, Ah Ran</creatorcontrib><creatorcontrib>Alam, Md Jobaidul</creatorcontrib><creatorcontrib>Yoon, Tae-Ho</creatorcontrib><creatorcontrib>Lee, Soo Rin</creatorcontrib><creatorcontrib>Park, Hyun</creatorcontrib><creatorcontrib>Kim, Doo-Nam</creatorcontrib><creatorcontrib>An, Doo-Hae</creatorcontrib><creatorcontrib>Lee, Jae-Bong</creatorcontrib><creatorcontrib>Lee, Chung Il</creatorcontrib><creatorcontrib>Kim, Hyun-Woo</creatorcontrib><title>Molecular characterization of an adiponectin receptor homolog in the white leg shrimp, Litopenaeus vannamei</title><title>PeerJ (San Francisco, CA)</title><addtitle>PeerJ</addtitle><description>Adiponectin (AdipoQ) and its receptors (AdipoRs) are strongly related to growth and development of skeletal muscle, as well as glucose and lipid metabolism in vertebrates. Herein we report the identification of the first full-length cDNA encoding an AdipoR homolog (Liv-AdipoR) from the decapod crustacean Litopenaeus vannamei using a combination of next generation sequencing (NGS) technology and bioinformatics analysis. The full-length Liv-AdipoR (1,245 bp) encoded a protein that exhibited the canonical seven transmembrane domains (7TMs) and the inversed topology that characterize members of the progestin and adipoQ receptor (PAQR) family. Based on the obtained sequence information, only a single orthologous AdipoR gene appears to exist in arthropods, whereas two paralogs, AdipoR1 and AdipoR2, have evolved in vertebrates. Transcriptional analysis suggested that the single Liv-AdipoR gene appears to serve the functions of two mammalian AdipoRs. At 72 h after injection of 50 pmol Liv-AdipoR dsRNA (340 bp) into L. vannamei thoracic muscle and deep abdominal muscle, transcription levels of Liv-AdipoR decreased by 93% and 97%, respectively. This confirmed optimal conditions for RNAi of Liv-AdipoR. Knockdown of Liv-AdipoR resulted in significant changes in the plasma levels of ammonia, 3-methylhistine, and ornithine, but not plasma glucose, suggesting that that Liv-AdipoR is important for maintaining muscle fibers. The chronic effect of Liv-AdipoR dsRNA injection was increased mortality. Transcriptomic analysis showed that 804 contigs were upregulated and 212 contigs were downregulated by the knockdown of Liv-AdipoR in deep abdominal muscle. The significantly upregulated genes were categorized as four main functional groups: RNA-editing and transcriptional regulators, molecular chaperones, metabolic regulators, and channel proteins.</description><subject>Adiponectin</subject><subject>Adiponectin receptor</subject><subject>Ammonia</subject><subject>Analysis</subject><subject>Aquaculture, Fisheries and Fish Science</subject><subject>Bioinformatics</subject><subject>Chaperones</subject><subject>Cloning</subject><subject>Crustacea</subject><subject>Crustaceans</subject><subject>Decapod crustacean</subject><subject>Decapoda</subject><subject>Double-stranded RNA</subject><subject>Enzymes</subject><subject>Fisheries</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Glucose metabolism</subject><subject>GPCR</subject><subject>Injection</subject><subject>Kinases</subject><subject>Lipid metabolism</subject><subject>Litopenaeus vannamei</subject><subject>Marine Biology</subject><subject>Metabolism</subject><subject>Molecular Biology</subject><subject>Musculoskeletal system</subject><subject>Ornithine</subject><subject>Oxidation</subject><subject>Physiology</subject><subject>Plasma levels</subject><subject>Progestin</subject><subject>Proteins</subject><subject>R&D</subject><subject>Research & development</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>RNA editing</subject><subject>RNA-mediated interference</subject><subject>RNAi</subject><subject>Rodents</subject><subject>Salinity</subject><subject>Skeletal muscle</subject><subject>Studies</subject><subject>Thorax</subject><subject>Transcription</subject><subject>Transcription (Genetics)</subject><subject>Transmembrane domains</subject><issn>2167-8359</issn><issn>2167-8359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNptkl2P1CAUhhujcTfr3vgDDImJMcZZoS2lvTHZbPzYZIw3ek1O4XTKSKECXaO_XmZnXWeMcAE5PLwHznmL4imjF0Iw8WZGDNuLsizZg-K0ZI1YtRXvHh7sT4rzGLc0j7ZsaFs9Lk5KUYtW0Pa0-PbJW1SLhUDUCAFUwmB-QTLeET8QcAS0mb1DlYwjARXOyQcy-slbvyE5lkYkP0aTkFjckDgGM82vydokP6MDXCK5AedgQvOkeDSAjXh-t54VX9-_-3L1cbX-_OH66nK9UlzQtOpVXZZaM1FzrVoNjGPfVBRYi6hqOnQl8A61FrQfeqE4bXjeQE-x6xrFsTorrve62sNWzvlBEH5KD0beBnzYSAjJKIsSWdl0quKDGLDuBfZ9rSDrKqUrpH2ftd7utealn1ArdCmAPRI9PnFmlBt_I-uOU97wLPDyTiD47wvGJCcTFVoLDv0SJWtzS0TDmi6jz_9Bt34JLpdKso5XLaesoX-pDeQPGDf4nFftROUlr6uK807s0l78h8pT42RU7udgcvzowouDCyOCTWP0dtk5IR6Dr_agCj7GgMN9MRiVO0vKW0vKnSUz_OywfPfoHwNWvwGHCN6W</recordid><startdate>20160714</startdate><enddate>20160714</enddate><creator>Kim, Ah Ran</creator><creator>Alam, Md Jobaidul</creator><creator>Yoon, Tae-Ho</creator><creator>Lee, Soo Rin</creator><creator>Park, Hyun</creator><creator>Kim, Doo-Nam</creator><creator>An, Doo-Hae</creator><creator>Lee, Jae-Bong</creator><creator>Lee, Chung Il</creator><creator>Kim, Hyun-Woo</creator><general>PeerJ. Ltd</general><general>PeerJ, Inc</general><general>PeerJ Inc</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20160714</creationdate><title>Molecular characterization of an adiponectin receptor homolog in the white leg shrimp, Litopenaeus vannamei</title><author>Kim, Ah Ran ; Alam, Md Jobaidul ; Yoon, Tae-Ho ; Lee, Soo Rin ; Park, Hyun ; Kim, Doo-Nam ; An, Doo-Hae ; Lee, Jae-Bong ; Lee, Chung Il ; Kim, Hyun-Woo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c570t-bc422dd1745dc8da15eb630a18eec40f92a59edd70bfb7c5065bfbab0e996c5e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Adiponectin</topic><topic>Adiponectin receptor</topic><topic>Ammonia</topic><topic>Analysis</topic><topic>Aquaculture, Fisheries and Fish Science</topic><topic>Bioinformatics</topic><topic>Chaperones</topic><topic>Cloning</topic><topic>Crustacea</topic><topic>Crustaceans</topic><topic>Decapod crustacean</topic><topic>Decapoda</topic><topic>Double-stranded RNA</topic><topic>Enzymes</topic><topic>Fisheries</topic><topic>Gene expression</topic><topic>Genes</topic><topic>Glucose metabolism</topic><topic>GPCR</topic><topic>Injection</topic><topic>Kinases</topic><topic>Lipid metabolism</topic><topic>Litopenaeus vannamei</topic><topic>Marine Biology</topic><topic>Metabolism</topic><topic>Molecular Biology</topic><topic>Musculoskeletal system</topic><topic>Ornithine</topic><topic>Oxidation</topic><topic>Physiology</topic><topic>Plasma levels</topic><topic>Progestin</topic><topic>Proteins</topic><topic>R&D</topic><topic>Research & development</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>RNA editing</topic><topic>RNA-mediated interference</topic><topic>RNAi</topic><topic>Rodents</topic><topic>Salinity</topic><topic>Skeletal muscle</topic><topic>Studies</topic><topic>Thorax</topic><topic>Transcription</topic><topic>Transcription (Genetics)</topic><topic>Transmembrane domains</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Ah Ran</creatorcontrib><creatorcontrib>Alam, Md Jobaidul</creatorcontrib><creatorcontrib>Yoon, Tae-Ho</creatorcontrib><creatorcontrib>Lee, Soo Rin</creatorcontrib><creatorcontrib>Park, Hyun</creatorcontrib><creatorcontrib>Kim, Doo-Nam</creatorcontrib><creatorcontrib>An, Doo-Hae</creatorcontrib><creatorcontrib>Lee, Jae-Bong</creatorcontrib><creatorcontrib>Lee, Chung Il</creatorcontrib><creatorcontrib>Kim, Hyun-Woo</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest Biological Science Collection</collection><collection>ProQuest Science Journals</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PeerJ (San Francisco, CA)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kim, Ah Ran</au><au>Alam, Md Jobaidul</au><au>Yoon, Tae-Ho</au><au>Lee, Soo Rin</au><au>Park, Hyun</au><au>Kim, Doo-Nam</au><au>An, Doo-Hae</au><au>Lee, Jae-Bong</au><au>Lee, Chung Il</au><au>Kim, Hyun-Woo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular characterization of an adiponectin receptor homolog in the white leg shrimp, Litopenaeus vannamei</atitle><jtitle>PeerJ (San Francisco, CA)</jtitle><addtitle>PeerJ</addtitle><date>2016-07-14</date><risdate>2016</risdate><volume>4</volume><spage>e2221</spage><epage>e2221</epage><pages>e2221-e2221</pages><artnum>e2221</artnum><issn>2167-8359</issn><eissn>2167-8359</eissn><abstract>Adiponectin (AdipoQ) and its receptors (AdipoRs) are strongly related to growth and development of skeletal muscle, as well as glucose and lipid metabolism in vertebrates. Herein we report the identification of the first full-length cDNA encoding an AdipoR homolog (Liv-AdipoR) from the decapod crustacean Litopenaeus vannamei using a combination of next generation sequencing (NGS) technology and bioinformatics analysis. The full-length Liv-AdipoR (1,245 bp) encoded a protein that exhibited the canonical seven transmembrane domains (7TMs) and the inversed topology that characterize members of the progestin and adipoQ receptor (PAQR) family. Based on the obtained sequence information, only a single orthologous AdipoR gene appears to exist in arthropods, whereas two paralogs, AdipoR1 and AdipoR2, have evolved in vertebrates. Transcriptional analysis suggested that the single Liv-AdipoR gene appears to serve the functions of two mammalian AdipoRs. At 72 h after injection of 50 pmol Liv-AdipoR dsRNA (340 bp) into L. vannamei thoracic muscle and deep abdominal muscle, transcription levels of Liv-AdipoR decreased by 93% and 97%, respectively. This confirmed optimal conditions for RNAi of Liv-AdipoR. Knockdown of Liv-AdipoR resulted in significant changes in the plasma levels of ammonia, 3-methylhistine, and ornithine, but not plasma glucose, suggesting that that Liv-AdipoR is important for maintaining muscle fibers. The chronic effect of Liv-AdipoR dsRNA injection was increased mortality. Transcriptomic analysis showed that 804 contigs were upregulated and 212 contigs were downregulated by the knockdown of Liv-AdipoR in deep abdominal muscle. The significantly upregulated genes were categorized as four main functional groups: RNA-editing and transcriptional regulators, molecular chaperones, metabolic regulators, and channel proteins.</abstract><cop>United States</cop><pub>PeerJ. Ltd</pub><pmid>27478708</pmid><doi>10.7717/peerj.2221</doi><oa>free_for_read</oa></addata></record> |
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subjects | Adiponectin Adiponectin receptor Ammonia Analysis Aquaculture, Fisheries and Fish Science Bioinformatics Chaperones Cloning Crustacea Crustaceans Decapod crustacean Decapoda Double-stranded RNA Enzymes Fisheries Gene expression Genes Glucose metabolism GPCR Injection Kinases Lipid metabolism Litopenaeus vannamei Marine Biology Metabolism Molecular Biology Musculoskeletal system Ornithine Oxidation Physiology Plasma levels Progestin Proteins R&D Research & development Ribonucleic acid RNA RNA editing RNA-mediated interference RNAi Rodents Salinity Skeletal muscle Studies Thorax Transcription Transcription (Genetics) Transmembrane domains |
title | Molecular characterization of an adiponectin receptor homolog in the white leg shrimp, Litopenaeus vannamei |
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