Epidemiological analysis of the emergence and disappearance of the SARS-CoV-2 Kappa variant within a region of British Columbia, Canada

• Published in: Canada communicable disease report 2022-01, Vol.48 (1), p.22-26
• Main Authors: Ghafari, Cher, Benusic, Michael, Prystajecky, Natalie, Sbihi, Hind, Kamelian, Kimia, Hoang, Linda
• Format: Article
• Language: English
• Subjects: Circulation; Contact tracing; Coronaviruses; COVID-19; COVID-19 vaccines; Disease transmission; Epidemiologic Study; Epidemiology; Gene sequencing; Genomes; Genomic analysis; Hospitalization; Households; International travel; kappa variant; Phylogenetics; sars-cov-2; Severe acute respiratory syndrome coronavirus 2; variant of concern; variant of interest; variant surveillance; Viral diseases; Virulence; Whole genome sequencing
• ISSN: 1188-4169; 1481-8531; 1481-8531
• DOI: 10.14745/ccdr.v48i01a04

The Kappa variant is designated as a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variant of interest (VOI). We identified 195 Kappa variant cases in a region of British Columbia, Canada-the largest published cluster in North America. To describe the epidemiology of the Kappa variant in relation to other circulating SARS-CoV-2 variants of concern (VOC) in the region to determine if the epidemiology of the Kappa variant supports a VOI or VOC status. Clinical specimens testing positive for SARS-CoV-2 collected between March 10 and May 2, 2021, were screened for the detection of known circulating VOCs; approximately 50% of specimens were subsequently selected for whole genome sequencing (WGS). Epidemiological analysis was performed comparing the characteristics of Kappa cases to the main circulating variants in the region (Alpha and Gamma) and to non-VOC/VOI cases. A total of 2,079 coronavirus disease 2019 (COVID-19) cases were reported in the region during the study period, of which 54% were selected for WGS. The 1,131 sequenced cases were categorized into Kappa, Alpha, Gamma and non-VOC/VOI. While Alpha and Gamma cases were found to have a significantly higher attack rate among household contacts compared to non-VOI/VOC cases, Kappa was not. Epidemiological analysis supports the designation of Kappa as a VOI and not a VOC. The Alpha and Gamma variants were found to be more transmissible, explaining their subsequent dominance in the region and the rapid disappearance of the Kappa variant. Variant surveillance strategies should focus on both detection of established VOCs and detection of potential new VOCs.