The complete mitochondrial genome of the Kandelia obovata Sheue, H.Y.Liu & J.W.H.Yong (Rhizophoraceae)

Sheue, H.Y.Liu & J.W.H.Yong is one of the most cold-resistant true mangrove species, and it is widely distributed from the South China Sea to southern Japan. In the current study, the complete mitochondrial genome sequence of was assembled using Illumina reads. It is the first mitochondrial geno...

Full description

Saved in:
Bibliographic Details
Published in:Mitochondrial DNA. Part B. Resources 2023, Vol.8 (12), p.1440-1444
Main Authors: Xu, Xiuming, Hou, Chengcheng, Shen, Yingjia
Format: Article
Language:English
Subjects:
Bats
Data Note
Ecology
Genes
Genomes
Genomics
Kandelia obovata
Laboratories
mangrove
Mitochondria
Mitochondrial DNA
mitochondrial genome
MitoGenome Report
Nucleotide sequence
Phylogenetics
phylogenomic tree
Phylogeny
Population genetics
Proteins
Rhizophoraceae
rRNA
Transfer RNA
Trees
Wetlands
Citations: Items that this one cites
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites cdi_FETCH-LOGICAL-c454t-dad8ef26800c8e57c6a2daef2e782f0242fecada5019adc0945c4c38661bfc113
container_end_page 1444
container_issue 12
container_start_page 1440
container_title Mitochondrial DNA. Part B. Resources
container_volume 8
creator Xu, Xiuming
Hou, Chengcheng
Shen, Yingjia
description Sheue, H.Y.Liu & J.W.H.Yong is one of the most cold-resistant true mangrove species, and it is widely distributed from the South China Sea to southern Japan. In the current study, the complete mitochondrial genome sequence of was assembled using Illumina reads. It is the first mitochondrial genome of the genus within the family Rhizophoraceae to be sequenced. The mitochondrial genome size is 312,146 bp with a total of 49 predicted genes, including 29 protein-coding genes, 17 transfer RNA genes, and 3 ribosomal RNA genes. The overall GC content of the genome is 41.87%. A phylogenetic tree constructed using nine complete mitochondrial genomes revealed that is more closely related to species. This study enriches the plastid genome of , furnishing valuable genetic insights for the investigation of evolutionary and population genetics in and other mangrove species.
doi_str_mv 10.1080/23802359.2023.2294889
format article
fullrecord <record><control><sourceid>proquest_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_e38a14a87b004c2d9de44a2e36109d57</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_e38a14a87b004c2d9de44a2e36109d57</doaj_id><sourcerecordid>2908202559</sourcerecordid><originalsourceid>FETCH-LOGICAL-c454t-dad8ef26800c8e57c6a2daef2e782f0242fecada5019adc0945c4c38661bfc113</originalsourceid><addsrcrecordid>eNpdkm1r1EAQx4NYbKn9CMqCIBV6cZ-S7L4qUrQPHghaEV8tc7uTyx5J9twkBf30brxraX01uzP_-TEz_LPsFaM5o4q-50JRLgqd8xRyzrVUSj_Ljub8Yi48f_Q-zE6GYUMpZaWoKl29yA6FYpXQrDzK6tsGiQ3dtsURSefHYJvQu-ihJWvsQ4ck1GRMos_QO2w9kLAKdzAC-dbghGfkKv-ZL_1E3pKb_EeefqFfk9Ovjf8Ttk2IYBHw3cvsoIZ2wJN9PM6-f_p4e3G1WH65vL74sFxYWchx4cAprHmpKLUKi8qWwB2kDFaK15RLXqMFBwVlGpylWhZWWqHKkq1qy5g4zq53XBdgY7bRdxB_mwDe_EuEuDYQR29bNCgUMAmqWlEqLXfaoZTAUZSMaldUiXW-Y22nVYfOYj9GaJ9An1Z635h1uDOMVqVQnCbC6Z4Qw68Jh9F0frDYttBjmAbDNUuLKC7nwd_8J92EKfbpVklFE4wXhU6qYqeyMQxDxPphGkbN7Axz7wwzO8PsnZH6Xj9e5aHr3gfiL4kqsjo</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2908202559</pqid></control><display><type>article</type><title>The complete mitochondrial genome of the Kandelia obovata Sheue, H.Y.Liu &amp; J.W.H.Yong (Rhizophoraceae)</title><source>Publicly Available Content Database</source><source>Taylor &amp; Francis Open Access(OpenAccess)</source><source>PubMed Central (Training)</source><creator>Xu, Xiuming ; Hou, Chengcheng ; Shen, Yingjia</creator><creatorcontrib>Xu, Xiuming ; Hou, Chengcheng ; Shen, Yingjia</creatorcontrib><description>Sheue, H.Y.Liu &amp; J.W.H.Yong is one of the most cold-resistant true mangrove species, and it is widely distributed from the South China Sea to southern Japan. In the current study, the complete mitochondrial genome sequence of was assembled using Illumina reads. It is the first mitochondrial genome of the genus within the family Rhizophoraceae to be sequenced. The mitochondrial genome size is 312,146 bp with a total of 49 predicted genes, including 29 protein-coding genes, 17 transfer RNA genes, and 3 ribosomal RNA genes. The overall GC content of the genome is 41.87%. A phylogenetic tree constructed using nine complete mitochondrial genomes revealed that is more closely related to species. This study enriches the plastid genome of , furnishing valuable genetic insights for the investigation of evolutionary and population genetics in and other mangrove species.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2023.2294889</identifier><identifier>PMID: 38173916</identifier><language>eng</language><publisher>England: Taylor &amp; Francis Ltd</publisher><subject>Bats ; Data Note ; Ecology ; Genes ; Genomes ; Genomics ; Kandelia obovata ; Laboratories ; mangrove ; Mitochondria ; Mitochondrial DNA ; mitochondrial genome ; MitoGenome Report ; Nucleotide sequence ; Phylogenetics ; phylogenomic tree ; Phylogeny ; Population genetics ; Proteins ; Rhizophoraceae ; rRNA ; Transfer RNA ; Trees ; Wetlands</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2023, Vol.8 (12), p.1440-1444</ispartof><rights>2023 The Author(s). Published by Informa UK Limited, trading as Taylor &amp; Francis Group.</rights><rights>2023 The Author(s). Published by Informa UK Limited, trading as Taylor &amp; Francis Group. This work is licensed under the Creative Commons Attribution – Non-Commercial License http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 The Author(s). Published by Informa UK Limited, trading as Taylor &amp; Francis Group. 2023 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c454t-dad8ef26800c8e57c6a2daef2e782f0242fecada5019adc0945c4c38661bfc113</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10763820/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2908202559?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,4024,25753,27923,27924,27925,37012,37013,44590,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38173916$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xu, Xiuming</creatorcontrib><creatorcontrib>Hou, Chengcheng</creatorcontrib><creatorcontrib>Shen, Yingjia</creatorcontrib><title>The complete mitochondrial genome of the Kandelia obovata Sheue, H.Y.Liu &amp; J.W.H.Yong (Rhizophoraceae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Sheue, H.Y.Liu &amp; J.W.H.Yong is one of the most cold-resistant true mangrove species, and it is widely distributed from the South China Sea to southern Japan. In the current study, the complete mitochondrial genome sequence of was assembled using Illumina reads. It is the first mitochondrial genome of the genus within the family Rhizophoraceae to be sequenced. The mitochondrial genome size is 312,146 bp with a total of 49 predicted genes, including 29 protein-coding genes, 17 transfer RNA genes, and 3 ribosomal RNA genes. The overall GC content of the genome is 41.87%. A phylogenetic tree constructed using nine complete mitochondrial genomes revealed that is more closely related to species. This study enriches the plastid genome of , furnishing valuable genetic insights for the investigation of evolutionary and population genetics in and other mangrove species.</description><subject>Bats</subject><subject>Data Note</subject><subject>Ecology</subject><subject>Genes</subject><subject>Genomes</subject><subject>Genomics</subject><subject>Kandelia obovata</subject><subject>Laboratories</subject><subject>mangrove</subject><subject>Mitochondria</subject><subject>Mitochondrial DNA</subject><subject>mitochondrial genome</subject><subject>MitoGenome Report</subject><subject>Nucleotide sequence</subject><subject>Phylogenetics</subject><subject>phylogenomic tree</subject><subject>Phylogeny</subject><subject>Population genetics</subject><subject>Proteins</subject><subject>Rhizophoraceae</subject><subject>rRNA</subject><subject>Transfer RNA</subject><subject>Trees</subject><subject>Wetlands</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdkm1r1EAQx4NYbKn9CMqCIBV6cZ-S7L4qUrQPHghaEV8tc7uTyx5J9twkBf30brxraX01uzP_-TEz_LPsFaM5o4q-50JRLgqd8xRyzrVUSj_Ljub8Yi48f_Q-zE6GYUMpZaWoKl29yA6FYpXQrDzK6tsGiQ3dtsURSefHYJvQu-ihJWvsQ4ck1GRMos_QO2w9kLAKdzAC-dbghGfkKv-ZL_1E3pKb_EeefqFfk9Ovjf8Ttk2IYBHw3cvsoIZ2wJN9PM6-f_p4e3G1WH65vL74sFxYWchx4cAprHmpKLUKi8qWwB2kDFaK15RLXqMFBwVlGpylWhZWWqHKkq1qy5g4zq53XBdgY7bRdxB_mwDe_EuEuDYQR29bNCgUMAmqWlEqLXfaoZTAUZSMaldUiXW-Y22nVYfOYj9GaJ9An1Z635h1uDOMVqVQnCbC6Z4Qw68Jh9F0frDYttBjmAbDNUuLKC7nwd_8J92EKfbpVklFE4wXhU6qYqeyMQxDxPphGkbN7Axz7wwzO8PsnZH6Xj9e5aHr3gfiL4kqsjo</recordid><startdate>2023</startdate><enddate>2023</enddate><creator>Xu, Xiuming</creator><creator>Hou, Chengcheng</creator><creator>Shen, Yingjia</creator><general>Taylor &amp; Francis Ltd</general><general>Taylor &amp; Francis</general><general>Taylor &amp; Francis Group</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>2023</creationdate><title>The complete mitochondrial genome of the Kandelia obovata Sheue, H.Y.Liu &amp; J.W.H.Yong (Rhizophoraceae)</title><author>Xu, Xiuming ; Hou, Chengcheng ; Shen, Yingjia</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c454t-dad8ef26800c8e57c6a2daef2e782f0242fecada5019adc0945c4c38661bfc113</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Bats</topic><topic>Data Note</topic><topic>Ecology</topic><topic>Genes</topic><topic>Genomes</topic><topic>Genomics</topic><topic>Kandelia obovata</topic><topic>Laboratories</topic><topic>mangrove</topic><topic>Mitochondria</topic><topic>Mitochondrial DNA</topic><topic>mitochondrial genome</topic><topic>MitoGenome Report</topic><topic>Nucleotide sequence</topic><topic>Phylogenetics</topic><topic>phylogenomic tree</topic><topic>Phylogeny</topic><topic>Population genetics</topic><topic>Proteins</topic><topic>Rhizophoraceae</topic><topic>rRNA</topic><topic>Transfer RNA</topic><topic>Trees</topic><topic>Wetlands</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xu, Xiuming</creatorcontrib><creatorcontrib>Hou, Chengcheng</creatorcontrib><creatorcontrib>Shen, Yingjia</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest research library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xu, Xiuming</au><au>Hou, Chengcheng</au><au>Shen, Yingjia</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete mitochondrial genome of the Kandelia obovata Sheue, H.Y.Liu &amp; J.W.H.Yong (Rhizophoraceae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2023</date><risdate>2023</risdate><volume>8</volume><issue>12</issue><spage>1440</spage><epage>1444</epage><pages>1440-1444</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Sheue, H.Y.Liu &amp; J.W.H.Yong is one of the most cold-resistant true mangrove species, and it is widely distributed from the South China Sea to southern Japan. In the current study, the complete mitochondrial genome sequence of was assembled using Illumina reads. It is the first mitochondrial genome of the genus within the family Rhizophoraceae to be sequenced. The mitochondrial genome size is 312,146 bp with a total of 49 predicted genes, including 29 protein-coding genes, 17 transfer RNA genes, and 3 ribosomal RNA genes. The overall GC content of the genome is 41.87%. A phylogenetic tree constructed using nine complete mitochondrial genomes revealed that is more closely related to species. This study enriches the plastid genome of , furnishing valuable genetic insights for the investigation of evolutionary and population genetics in and other mangrove species.</abstract><cop>England</cop><pub>Taylor &amp; Francis Ltd</pub><pmid>38173916</pmid><doi>10.1080/23802359.2023.2294889</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2380-2359
ispartof Mitochondrial DNA. Part B. Resources, 2023, Vol.8 (12), p.1440-1444
issn 2380-2359
2380-2359
language eng
recordid cdi_doaj_primary_oai_doaj_org_article_e38a14a87b004c2d9de44a2e36109d57
source Publicly Available Content Database; Taylor & Francis Open Access(OpenAccess); PubMed Central (Training)
subjects Bats
Data Note
Ecology
Genes
Genomes
Genomics
Kandelia obovata
Laboratories
mangrove
Mitochondria
Mitochondrial DNA
mitochondrial genome
MitoGenome Report
Nucleotide sequence
Phylogenetics
phylogenomic tree
Phylogeny
Population genetics
Proteins
Rhizophoraceae
rRNA
Transfer RNA
Trees
Wetlands
title The complete mitochondrial genome of the Kandelia obovata Sheue, H.Y.Liu & J.W.H.Yong (Rhizophoraceae)
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-25T20%3A23%3A28IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_doaj_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20complete%20mitochondrial%20genome%20of%20the%20Kandelia%20obovata%20Sheue,%20H.Y.Liu%20&%20J.W.H.Yong%20(Rhizophoraceae)&rft.jtitle=Mitochondrial%20DNA.%20Part%20B.%20Resources&rft.au=Xu,%20Xiuming&rft.date=2023&rft.volume=8&rft.issue=12&rft.spage=1440&rft.epage=1444&rft.pages=1440-1444&rft.issn=2380-2359&rft.eissn=2380-2359&rft_id=info:doi/10.1080/23802359.2023.2294889&rft_dat=%3Cproquest_doaj_%3E2908202559%3C/proquest_doaj_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c454t-dad8ef26800c8e57c6a2daef2e782f0242fecada5019adc0945c4c38661bfc113%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2908202559&rft_id=info:pmid/38173916&rfr_iscdi=true