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Characterization and phylogenetic analysis of the chloroplast genome of Diospyros aff. oleifera
The genus (Ebenaceae) has significant economic value. During field surveys, we discovered a specimen showing morphological overlap with both . and var. silvestris, provisionally named aff. . To resolve its taxonomy, we sequenced and analyzed its chloroplast genome. The complete chloroplast genome is...
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| Published in: | Mitochondrial DNA. Part B. Resources 2024-11, Vol.9 (11), p.1467-1472 |
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| container_end_page | 1472 |
| container_issue | 11 |
| container_start_page | 1467 |
| container_title | Mitochondrial DNA. Part B. Resources |
| container_volume | 9 |
| creator | Zeng, Xingyu Zhao, Wenyan Deng, Aihua Xiang, Lixuan Tang, Xuan Li, Huan Yin, Hanbin Huang, Rongjie Xiao, Yulong Liu, Yi Yao, Zui Liu, Yongle Du, Zhitian Huang, Kerui |
| description | The
genus (Ebenaceae) has significant economic value. During field surveys, we discovered a
specimen showing morphological overlap with both
.
and
var. silvestris, provisionally named
aff.
. To resolve its taxonomy, we sequenced and analyzed its chloroplast genome. The complete chloroplast genome is 157,732 bp with a quadripartite structure. mVISTA analysis revealed unique sequence variations compared to related species. Phylogenetic analysis using 75 protein-coding genes grouped it with
, indicating their close relationship. Our findings suggest this specimen likely represents a novel, undescribed species. This study provides insights into Diospyros diversity and a foundation for future research. |
| doi_str_mv | 10.1080/23802359.2024.2419451 |
| format | article |
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genus (Ebenaceae) has significant economic value. During field surveys, we discovered a
specimen showing morphological overlap with both
.
and
var. silvestris, provisionally named
aff.
. To resolve its taxonomy, we sequenced and analyzed its chloroplast genome. The complete chloroplast genome is 157,732 bp with a quadripartite structure. mVISTA analysis revealed unique sequence variations compared to related species. Phylogenetic analysis using 75 protein-coding genes grouped it with
, indicating their close relationship. Our findings suggest this specimen likely represents a novel, undescribed species. This study provides insights into Diospyros diversity and a foundation for future research.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2024.2419451</identifier><identifier>PMID: 39479478</identifier><language>eng</language><publisher>England: Taylor & Francis Ltd</publisher><subject>Amino acid sequence ; Animal diseases ; chloroplast genome ; Chloroplasts ; Data Note ; Diospyros ; Diospyros aff. oleifera ; Ebenaceae ; Environmental science ; Fruits ; Genes ; Genomes ; Genomic analysis ; Leaves ; Mitochondrial DNA ; Morphology ; Nucleotide sequence ; phylogenetic analysis ; Phylogenetics ; Phylogeny ; Plastome Report ; Protein structure ; Proteins</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2024-11, Vol.9 (11), p.1467-1472</ispartof><rights>2024 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2024 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2024 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2024 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c384t-f45aef0571f67c1da0a7f5dc8a8392cf04e9ba4f3f79efc7886bb65bf32989563</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11520100/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/3133864937?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39479478$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zeng, Xingyu</creatorcontrib><creatorcontrib>Zhao, Wenyan</creatorcontrib><creatorcontrib>Deng, Aihua</creatorcontrib><creatorcontrib>Xiang, Lixuan</creatorcontrib><creatorcontrib>Tang, Xuan</creatorcontrib><creatorcontrib>Li, Huan</creatorcontrib><creatorcontrib>Yin, Hanbin</creatorcontrib><creatorcontrib>Huang, Rongjie</creatorcontrib><creatorcontrib>Xiao, Yulong</creatorcontrib><creatorcontrib>Liu, Yi</creatorcontrib><creatorcontrib>Yao, Zui</creatorcontrib><creatorcontrib>Liu, Yongle</creatorcontrib><creatorcontrib>Du, Zhitian</creatorcontrib><creatorcontrib>Huang, Kerui</creatorcontrib><title>Characterization and phylogenetic analysis of the chloroplast genome of Diospyros aff. oleifera</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>The
genus (Ebenaceae) has significant economic value. During field surveys, we discovered a
specimen showing morphological overlap with both
.
and
var. silvestris, provisionally named
aff.
. To resolve its taxonomy, we sequenced and analyzed its chloroplast genome. The complete chloroplast genome is 157,732 bp with a quadripartite structure. mVISTA analysis revealed unique sequence variations compared to related species. Phylogenetic analysis using 75 protein-coding genes grouped it with
, indicating their close relationship. Our findings suggest this specimen likely represents a novel, undescribed species. This study provides insights into Diospyros diversity and a foundation for future research.</description><subject>Amino acid sequence</subject><subject>Animal diseases</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Data Note</subject><subject>Diospyros</subject><subject>Diospyros aff. oleifera</subject><subject>Ebenaceae</subject><subject>Environmental science</subject><subject>Fruits</subject><subject>Genes</subject><subject>Genomes</subject><subject>Genomic analysis</subject><subject>Leaves</subject><subject>Mitochondrial DNA</subject><subject>Morphology</subject><subject>Nucleotide sequence</subject><subject>phylogenetic analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plastome Report</subject><subject>Protein structure</subject><subject>Proteins</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdkl9rFDEUxQdRbKn9CMqAL77smr-T5Elk1bZQ8EWfw53Mzc4s2cmYzArrpzfjbksrBBLOPfdH7uVU1VtK1pRo8pFxTRiXZs0IE2smqBGSvqguF321FF4-eV9U1znvCCG04UoZ9bq64EaocvRlZTc9JHAzpuEPzEMcaxi7euqPIW5xxHlwRYBwzEOuo6_nHmvXh5jiFCDPdfHEPS6VL0PM0zHFXIP36zoGHDwmeFO98hAyXp_vq-rnt68_Nrer--83d5vP9yvHtZhXXkhAT6SivlGOdkBAedk5DZob5jwRaFoQnntl0DulddO2jWw9Z0Yb2fCr6u7E7SLs7JSGPaSjjTDYf0JMWwupTBPQoqCaN5xSLbgQjJnW-EbQFplwspWusD6dWNOh3WPncJwThGfQ55Vx6O02_raUSkYoIYXw4UxI8dcB82z3Q3YYAowYD9lyylgjhNa8WN__Z93FQyorX1yc60YYropLnlyubDgn9I-_ocQukbAPkbBLJOw5EqXv3dNRHrseAsD_AoVJsfk</recordid><startdate>20241101</startdate><enddate>20241101</enddate><creator>Zeng, Xingyu</creator><creator>Zhao, Wenyan</creator><creator>Deng, Aihua</creator><creator>Xiang, Lixuan</creator><creator>Tang, Xuan</creator><creator>Li, Huan</creator><creator>Yin, Hanbin</creator><creator>Huang, Rongjie</creator><creator>Xiao, Yulong</creator><creator>Liu, Yi</creator><creator>Yao, Zui</creator><creator>Liu, Yongle</creator><creator>Du, Zhitian</creator><creator>Huang, Kerui</creator><general>Taylor & Francis Ltd</general><general>Taylor & Francis</general><general>Taylor & Francis Group</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20241101</creationdate><title>Characterization and phylogenetic analysis of the chloroplast genome of Diospyros aff. oleifera</title><author>Zeng, Xingyu ; Zhao, Wenyan ; Deng, Aihua ; Xiang, Lixuan ; Tang, Xuan ; Li, Huan ; Yin, Hanbin ; Huang, Rongjie ; Xiao, Yulong ; Liu, Yi ; Yao, Zui ; Liu, Yongle ; Du, Zhitian ; Huang, Kerui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c384t-f45aef0571f67c1da0a7f5dc8a8392cf04e9ba4f3f79efc7886bb65bf32989563</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Amino acid sequence</topic><topic>Animal diseases</topic><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Data Note</topic><topic>Diospyros</topic><topic>Diospyros aff. oleifera</topic><topic>Ebenaceae</topic><topic>Environmental science</topic><topic>Fruits</topic><topic>Genes</topic><topic>Genomes</topic><topic>Genomic analysis</topic><topic>Leaves</topic><topic>Mitochondrial DNA</topic><topic>Morphology</topic><topic>Nucleotide sequence</topic><topic>phylogenetic analysis</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plastome Report</topic><topic>Protein structure</topic><topic>Proteins</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zeng, Xingyu</creatorcontrib><creatorcontrib>Zhao, Wenyan</creatorcontrib><creatorcontrib>Deng, Aihua</creatorcontrib><creatorcontrib>Xiang, Lixuan</creatorcontrib><creatorcontrib>Tang, Xuan</creatorcontrib><creatorcontrib>Li, Huan</creatorcontrib><creatorcontrib>Yin, Hanbin</creatorcontrib><creatorcontrib>Huang, Rongjie</creatorcontrib><creatorcontrib>Xiao, Yulong</creatorcontrib><creatorcontrib>Liu, Yi</creatorcontrib><creatorcontrib>Yao, Zui</creatorcontrib><creatorcontrib>Liu, Yongle</creatorcontrib><creatorcontrib>Du, Zhitian</creatorcontrib><creatorcontrib>Huang, Kerui</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zeng, Xingyu</au><au>Zhao, Wenyan</au><au>Deng, Aihua</au><au>Xiang, Lixuan</au><au>Tang, Xuan</au><au>Li, Huan</au><au>Yin, Hanbin</au><au>Huang, Rongjie</au><au>Xiao, Yulong</au><au>Liu, Yi</au><au>Yao, Zui</au><au>Liu, Yongle</au><au>Du, Zhitian</au><au>Huang, Kerui</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization and phylogenetic analysis of the chloroplast genome of Diospyros aff. oleifera</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2024-11-01</date><risdate>2024</risdate><volume>9</volume><issue>11</issue><spage>1467</spage><epage>1472</epage><pages>1467-1472</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>The
genus (Ebenaceae) has significant economic value. During field surveys, we discovered a
specimen showing morphological overlap with both
.
and
var. silvestris, provisionally named
aff.
. To resolve its taxonomy, we sequenced and analyzed its chloroplast genome. The complete chloroplast genome is 157,732 bp with a quadripartite structure. mVISTA analysis revealed unique sequence variations compared to related species. Phylogenetic analysis using 75 protein-coding genes grouped it with
, indicating their close relationship. Our findings suggest this specimen likely represents a novel, undescribed species. This study provides insights into Diospyros diversity and a foundation for future research.</abstract><cop>England</cop><pub>Taylor & Francis Ltd</pub><pmid>39479478</pmid><doi>10.1080/23802359.2024.2419451</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Mitochondrial DNA. Part B. Resources, 2024-11, Vol.9 (11), p.1467-1472 |
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| language | eng |
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| source | Taylor & Francis Open Access*; PubMed (Medline); Publicly Available Content Database |
| subjects | Amino acid sequence Animal diseases chloroplast genome Chloroplasts Data Note Diospyros Diospyros aff. oleifera Ebenaceae Environmental science Fruits Genes Genomes Genomic analysis Leaves Mitochondrial DNA Morphology Nucleotide sequence phylogenetic analysis Phylogenetics Phylogeny Plastome Report Protein structure Proteins |
| title | Characterization and phylogenetic analysis of the chloroplast genome of Diospyros aff. oleifera |
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