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GW2 Functions as an E3 Ubiquitin Ligase for Rice Expansin-Like 1
Seed size is one of the most important traits determining the yield of cereal crops. Many studies have been performed to uncover the mechanism of seed development. However, much remains to be understood, especially at the molecular level, although several genes involved in seed size have been identi...
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Published in: | International journal of molecular sciences 2018-06, Vol.19 (7), p.1904 |
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description | Seed size is one of the most important traits determining the yield of cereal crops. Many studies have been performed to uncover the mechanism of seed development. However, much remains to be understood, especially at the molecular level, although several genes involved in seed size have been identified. Here, we show that rice Grain Width 2 (GW2), a RING-type E3 ubiquitin ligase, can control seed development by catalyzing the ubiquitination of expansin-like 1 (EXPLA1), a cell wall-loosening protein that increases cell growth. Microscopic examination revealed that a
mutant had a chalky endosperm due to the presence of loosely packed, spherical starch granules, although the grain shape was normal. Yeast two-hybrid and in vitro pull-down assays showed a strong interaction between GW2 and EXPLA1. In vitro ubiquitination analysis demonstrated that EXPLA1 was ubiquitinated by GW2 at lysine 279 (K279). GW2 and EXPLA1 colocalized to the nucleus when expressed simultaneously. These results suggest that GW2 negatively regulates seed size by targeting EXPLA1 for degradation through its E3 ubiquitin ligase activity. |
doi_str_mv | 10.3390/ijms19071904 |
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mutant had a chalky endosperm due to the presence of loosely packed, spherical starch granules, although the grain shape was normal. Yeast two-hybrid and in vitro pull-down assays showed a strong interaction between GW2 and EXPLA1. In vitro ubiquitination analysis demonstrated that EXPLA1 was ubiquitinated by GW2 at lysine 279 (K279). GW2 and EXPLA1 colocalized to the nucleus when expressed simultaneously. These results suggest that GW2 negatively regulates seed size by targeting EXPLA1 for degradation through its E3 ubiquitin ligase activity.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms19071904</identifier><identifier>PMID: 29958473</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Amino acids ; Biodegradation ; Cell division ; Cell walls ; chalky endosperm ; Cloning ; E3 ubiquitin ligase ; Endosperm ; Endosperm - genetics ; Enzymes ; EXPLA1 ; Genes ; Genomics ; Grain ; Grain size ; GW2 ; Localization ; Loosening ; Lysine ; Oryza - genetics ; Oryza - growth & development ; Plant growth ; Plant Proteins - genetics ; Proteins ; Rice ; seed size ; Seeds ; Seeds - anatomy & histology ; Seeds - genetics ; Starch ; Strong interactions (field theory) ; Ubiquitin ; Ubiquitin-protein ligase ; Ubiquitin-Protein Ligases - genetics ; Ubiquitination ; Ubiquitination - genetics ; Yeast</subject><ispartof>International journal of molecular sciences, 2018-06, Vol.19 (7), p.1904</ispartof><rights>2018. This work is licensed under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2018 by the authors. 2018</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c544t-ade9f0ae2211118bfbc1973a158584185a64a3d72756363d92cf3775db0a01113</citedby><cites>FETCH-LOGICAL-c544t-ade9f0ae2211118bfbc1973a158584185a64a3d72756363d92cf3775db0a01113</cites><orcidid>0000-0003-2191-3514</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2109444501/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2109444501?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29958473$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Choi, Beom Seok</creatorcontrib><creatorcontrib>Kim, Yeon Jeong</creatorcontrib><creatorcontrib>Markkandan, Kesavan</creatorcontrib><creatorcontrib>Koo, Yeon Jong</creatorcontrib><creatorcontrib>Song, Jong Tae</creatorcontrib><creatorcontrib>Seo, Hak Soo</creatorcontrib><title>GW2 Functions as an E3 Ubiquitin Ligase for Rice Expansin-Like 1</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>Seed size is one of the most important traits determining the yield of cereal crops. Many studies have been performed to uncover the mechanism of seed development. However, much remains to be understood, especially at the molecular level, although several genes involved in seed size have been identified. Here, we show that rice Grain Width 2 (GW2), a RING-type E3 ubiquitin ligase, can control seed development by catalyzing the ubiquitination of expansin-like 1 (EXPLA1), a cell wall-loosening protein that increases cell growth. Microscopic examination revealed that a
mutant had a chalky endosperm due to the presence of loosely packed, spherical starch granules, although the grain shape was normal. Yeast two-hybrid and in vitro pull-down assays showed a strong interaction between GW2 and EXPLA1. In vitro ubiquitination analysis demonstrated that EXPLA1 was ubiquitinated by GW2 at lysine 279 (K279). GW2 and EXPLA1 colocalized to the nucleus when expressed simultaneously. These results suggest that GW2 negatively regulates seed size by targeting EXPLA1 for degradation through its E3 ubiquitin ligase activity.</description><subject>Amino acids</subject><subject>Biodegradation</subject><subject>Cell division</subject><subject>Cell walls</subject><subject>chalky endosperm</subject><subject>Cloning</subject><subject>E3 ubiquitin ligase</subject><subject>Endosperm</subject><subject>Endosperm - genetics</subject><subject>Enzymes</subject><subject>EXPLA1</subject><subject>Genes</subject><subject>Genomics</subject><subject>Grain</subject><subject>Grain size</subject><subject>GW2</subject><subject>Localization</subject><subject>Loosening</subject><subject>Lysine</subject><subject>Oryza - genetics</subject><subject>Oryza - growth & development</subject><subject>Plant growth</subject><subject>Plant Proteins - genetics</subject><subject>Proteins</subject><subject>Rice</subject><subject>seed size</subject><subject>Seeds</subject><subject>Seeds - anatomy & histology</subject><subject>Seeds - genetics</subject><subject>Starch</subject><subject>Strong interactions (field theory)</subject><subject>Ubiquitin</subject><subject>Ubiquitin-protein ligase</subject><subject>Ubiquitin-Protein Ligases - genetics</subject><subject>Ubiquitination</subject><subject>Ubiquitination - genetics</subject><subject>Yeast</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdkc9vFCEUx4mxsbV682xIvHhwLDx-DRdT02xrk02aGBuPhGGYlXUWtjBj7H9f6tZmWwLhBb583nt8EXpHyWfGNDkJ602hmqi6-At0RDlAQ4hUL_fiQ_S6lDUhwEDoV-gQtBYtV-wInV78BHw-RzeFFAu2dUa8YPi6CzdzmELEy7CyxeMhZfw9OI8Xf7c2lhCbZfjtMX2DDgY7Fv_2YT9G1-eLH2ffmuXVxeXZ12XjBOdTY3uvB2I9AK2j7YbOUa2YpaKtldBWWMkt6xUoIZlkvQY3MKVE3xFL6gt2jC533D7ZtdnmsLH51iQbzL-DlFfG5im40RsvbddpEK2qqVkvNSjvne0ZcN51Q19ZX3as7dxtfO98nLIdn0Cf3sTwy6zSHyOJYkxCBXx8AOR0M_symU0ozo-jjT7NxQCR0DIGIKr0wzPpOs051q8yQInmnAty392nncrlVEr2w2MxlJh7m82-zVX-fr-BR_F_X9kd9cSgNg</recordid><startdate>20180628</startdate><enddate>20180628</enddate><creator>Choi, Beom Seok</creator><creator>Kim, Yeon Jeong</creator><creator>Markkandan, Kesavan</creator><creator>Koo, Yeon Jong</creator><creator>Song, Jong Tae</creator><creator>Seo, Hak Soo</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0003-2191-3514</orcidid></search><sort><creationdate>20180628</creationdate><title>GW2 Functions as an E3 Ubiquitin Ligase for Rice Expansin-Like 1</title><author>Choi, Beom Seok ; 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Many studies have been performed to uncover the mechanism of seed development. However, much remains to be understood, especially at the molecular level, although several genes involved in seed size have been identified. Here, we show that rice Grain Width 2 (GW2), a RING-type E3 ubiquitin ligase, can control seed development by catalyzing the ubiquitination of expansin-like 1 (EXPLA1), a cell wall-loosening protein that increases cell growth. Microscopic examination revealed that a
mutant had a chalky endosperm due to the presence of loosely packed, spherical starch granules, although the grain shape was normal. Yeast two-hybrid and in vitro pull-down assays showed a strong interaction between GW2 and EXPLA1. In vitro ubiquitination analysis demonstrated that EXPLA1 was ubiquitinated by GW2 at lysine 279 (K279). GW2 and EXPLA1 colocalized to the nucleus when expressed simultaneously. These results suggest that GW2 negatively regulates seed size by targeting EXPLA1 for degradation through its E3 ubiquitin ligase activity.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>29958473</pmid><doi>10.3390/ijms19071904</doi><orcidid>https://orcid.org/0000-0003-2191-3514</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Amino acids Biodegradation Cell division Cell walls chalky endosperm Cloning E3 ubiquitin ligase Endosperm Endosperm - genetics Enzymes EXPLA1 Genes Genomics Grain Grain size GW2 Localization Loosening Lysine Oryza - genetics Oryza - growth & development Plant growth Plant Proteins - genetics Proteins Rice seed size Seeds Seeds - anatomy & histology Seeds - genetics Starch Strong interactions (field theory) Ubiquitin Ubiquitin-protein ligase Ubiquitin-Protein Ligases - genetics Ubiquitination Ubiquitination - genetics Yeast |
title | GW2 Functions as an E3 Ubiquitin Ligase for Rice Expansin-Like 1 |
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