ATP-Binding and Hydrolysis in Inflammasome Activation

• Published in: Molecules (Basel, Switzerland) Switzerland), 2020-10, Vol.25 (19), p.4572
• Main Authors: Sandall, Christina F, Ziehr, Bjoern K, MacDonald, Justin A
• Format: Article
• Language: English
• Subjects: Adenosine diphosphate; Adenosine triphosphate; Adenosine Triphosphate - metabolism; Animals; Apoptosis; ATP; ATPase; Binding; Calcium-Binding Proteins - metabolism; Cytokines; Domains; Gene expression; Genomes; Humans; Hydrolysis; Immune response; inflammasome; Inflammasomes; Inflammasomes - metabolism; Inflammation; Innate immunity; Molecular dynamics; Molecular Dynamics Simulation; NACHT domain; NLR; NLR Family, Pyrin Domain-Containing 3 Protein - metabolism; Nlr protein; NLRP; NOD-like receptor; Nucleotides; Occupancy; Plant diseases; Protein structure; Proteins; Review; Sensors; Signal transduction; Structure-function relationships; Topology
• ISSN: 1420-3049; 1420-3049
• DOI: 10.3390/molecules25194572

The prototypical model for NOD-like receptor (NLR) inflammasome assembly includes nucleotide-dependent activation of the NLR downstream of pathogen- or danger-associated molecular pattern (PAMP or DAMP) recognition, followed by nucleation of hetero-oligomeric platforms that lie upstream of inflammatory responses associated with innate immunity. As members of the STAND ATPases, the NLRs are generally thought to share a similar model of ATP-dependent activation and effect. However, recent observations have challenged this paradigm to reveal novel and complex biochemical processes to discern NLRs from other STAND proteins. In this review, we highlight past findings that identify the regulatory importance of conserved ATP-binding and hydrolysis motifs within the nucleotide-binding NACHT domain of NLRs and explore recent breakthroughs that generate connections between NLR protein structure and function. Indeed, newly deposited NLR structures for NLRC4 and NLRP3 have provided unique perspectives on the ATP-dependency of inflammasome activation. Novel molecular dynamic simulations of NLRP3 examined the active site of ADP- and ATP-bound models. The findings support distinctions in nucleotide-binding domain topology with occupancy of ATP or ADP that are in turn disseminated on to the global protein structure. Ultimately, studies continue to reveal how the ATP-binding and hydrolysis properties of NACHT domains in different NLRs integrate with signaling modules and binding partners to control innate immune responses at the molecular level.