Application of tuf gene sequence analysis for the identification of species of coagulase-negative staphylococci in clinical samples and evaluation of their antimicrobial resistance pattern

• Published in: Infection and drug resistance 2018-01, Vol.11, p.1275-1282
• Main Authors: Khosravi, Azar Dokht, Roointan, Mitra, Abbasi Montazeri, Effat, Aslani, Sajad, Hashemzadeh, Mohammad, Taheri Soodejani, Moslem
• Format: Article
• Language: English
• Subjects: Antibiotic resistance; Antibiotics; Antimicrobial agents; Antimicrobial resistance; Cefoxitin; Chromosomes; Clindamycin; Clinical isolates; Coagulase; Coagulase-negative staphylococci (CoNS); Daptomycin; Deoxyribonucleic acid; DNA; Drug resistance; Endocarditis; Gram-positive bacteria; Hospitals; Immunocompromised hosts; Intensive care; Linezolid; Methicillin; Methods; Original Research; Patients; PCR; Phenotyping; Phylogenetics; Phylogeny; Polymerase chain reaction; Skin; Software; Species; Staphylococcus; Staphylococcus epidermidis; Staphylococcus infections; Surveillance; susceptibility testing; Tuf gene; Urine
• ISSN: 1178-6973; 1178-6973
• DOI: 10.2147/IDR.S172144

Coagulase-negative staphylococci (CoNS) are normal inhabitants of human skin and mucous membranes. However, CoNS represent one of the major nosocomial pathogens, especially in immunocompromised patients. The increasing incidence of CoNS and mainly methicillin-resistant strains underlines the need for an accurate identification of Staphylococcus isolates at the species level. Analysis of the gene proved to be an accurate tool for the species identification of CoNS. The aims of this study were to identify the CoNS species by gene-based polymerase chain reaction method and sequencing, and to determine the frequency of CoNS clinical isolates resistant to methicillin (MRCoNS) and other antibiotics. A total of 200 staphylococci isolates were collected from various clinical samples. Phenotyping methods were used for initial identification followed by polymerase chain reaction amplification of gene with subsequent sequencing. The phylogenetic relationships among species were analyzed using the neighbor-joining method based on the partial gene sequence of . Microbroth dilution test was used for screening methicillin resistance, and disk diffusion susceptibility testing was performed for evaluation of antibiotic resistance among the isolates. In the present study, 125 isolates were identified as CoNS; among them, 54(43.2%) and 50 (40.0%) were demonstrated as the most prevalent species. Resistance to methicillin was detected in 54.4% of the CoNS based on microbroth dilution method. In disk diffusion susceptibility testing, the greatest resistance of CoNS was demonstrated for cefoxitin (65.4%), cotrimethoxazole (54.4%), and clindamycin (49.6%), while daptomycin (87.2%) and linezolid (83.2%) showed the greatest effectiveness for CoNS isolates. Our results confirmed the predominance of and among CoNS isolates. The high prevalence of MRCoNS strains is a serious concern and strongly suggests the need for control program measures in our hospitals in order to reduce MRCoNS infections, especially in immunocompromised patients.