Association of SARS-CoV-2 BA.4/BA.5 Omicron lineages with immune escape and clinical outcome

• Published in: Nature communications 2023-03, Vol.14 (1), p.1407-11, Article 1407
• Main Authors: Lewnard, Joseph A., Hong, Vennis, Kim, Jeniffer S., Shaw, Sally F., Lewin, Bruno, Takhar, Harpreet, Tartof, Sara Y.
• Format: Article
• Language: English
• Subjects: 631/326/596/4130; 692/308/174; 692/699/255/2514; Breakthrough Infections; Coronaviruses; COVID-19; COVID-19 - epidemiology; COVID-19 Vaccines; Emergency medical care; Emergency medical services; Epidemiology; Health planning; Humanities and Social Sciences; Humans; Immune evasion; Infections; multidisciplinary; Public health; SARS-CoV-2 - genetics; Science; Science (multidisciplinary); Sensitivity analysis; Severe acute respiratory syndrome coronavirus 2
• ISSN: 2041-1723; 2041-1723
• DOI: 10.1038/s41467-023-37051-5

Expansion of the SARS-CoV-2 BA.4 and BA.5 Omicron subvariants in populations with prevalent immunity from prior infection and vaccination, and associated burden of severe COVID-19, has raised concerns about epidemiologic characteristics of these lineages including their association with immune escape or severe clinical outcomes. Here we show that BA.4/BA.5 cases in a large US healthcare system had at least 55% (95% confidence interval: 43–69%) higher adjusted odds of prior documented infection than time-matched BA.2 cases, as well as 15% (9–21%) and 38% (27–49%) higher adjusted odds of having received 3 and ≥4 COVID-19 vaccine doses, respectively. However, after adjusting for differences in epidemiologic characteristics among cases with each lineage, BA.4/BA.5 infection was not associated with differential risk of emergency department presentation, hospital admission, or intensive care unit admission following an initial outpatient diagnosis. This finding held in sensitivity analyses correcting for potential exposure misclassification resulting from unascertained prior infections. Our results demonstrate that the reduced severity associated with prior (BA.1 and BA.2) Omicron lineages, relative to the Delta variant, has persisted with BA.4/BA.5, despite the association of BA.4/BA.5 with increased risk of breakthrough infection among previously vaccinated or infected individuals. Continuous monitoring of SARS-CoV-2 variant properties is important for public health planning. Here, the authors use data from the United States and show that Omicron BA.4/5 subvariants, which became dominant in mid-2022, have stronger immune escape properties, but are no more severe, than the previously dominant BA.2.