The inorganic pyrophosphatases of microorganisms: a structural and functional review

• Published in: PeerJ (San Francisco, CA) CA), 2024-06, Vol.12, p.e17496, Article e17496
• Main Authors: García-Contreras, Rodolfo, de la Mora, Javier, Mora-Montes, Héctor Manuel, Martínez-Álvarez, José A, Vicente-Gómez, Marcos, Padilla-Vaca, Felipe, Vargas-Maya, Naurú Idalia, Franco, Bernardo
• Format: Article
• Language: English
• Subjects: Bacteria; Bacteria - enzymology; Biochemistry; Bioinformatics; Biotechnological applications; Catalysis; Cell death; Cytoplasmic pyrophosphatase; Diphosphates - chemistry; Diphosphates - metabolism; Enzymes; Fungi - enzymology; Hydrolysis; Inorganic Pyrophosphatase - chemistry; Inorganic Pyrophosphatase - genetics; Inorganic Pyrophosphatase - metabolism; Membrane-bound pyrophosphatase; Microbiology; Microorganisms; Nucleic acids; Phosphates; Physiological aspects
• ISSN: 2167-8359; 2167-8359
• DOI: 10.7717/peerj.17496

Pyrophosphatases (PPases) are enzymes that catalyze the hydrolysis of pyrophosphate (PPi), a byproduct of the synthesis and degradation of diverse biomolecules. The accumulation of PPi in the cell can result in cell death. Although the substrate is the same, there are variations in the catalysis and features of these enzymes. Two enzyme forms have been identified in bacteria: cytoplasmic or soluble pyrophosphatases and membrane-bound pyrophosphatases, which play major roles in cell bioenergetics. In eukaryotic cells, cytoplasmic enzymes are the predominant form of PPases (c-PPases), while membrane enzymes (m-PPases) are found only in protists and plants. The study of bacterial cytoplasmic and membrane-bound pyrophosphatases has slowed in recent years. These enzymes are central to cell metabolism and physiology since phospholipid and nucleic acid synthesis release important amounts of PPi that must be removed to allow biosynthesis to continue. In this review, two aims were pursued: first, to provide insight into the structural features of PPases known to date and that are well characterized, and to provide examples of enzymes with novel features. Second, the scientific community should continue studying these enzymes because they have many biotechnological applications. Additionally, in this review, we provide evidence that there are m-PPases present in fungi; to date, no examples have been characterized. Therefore, the diversity of PPase enzymes is still a fruitful field of research. Additionally, we focused on the roles of H /Na pumps and m-PPases in cell bioenergetics. Finally, we provide some examples of the applications of these enzymes in molecular biology and biotechnology, especially in plants. This review is valuable for professionals in the biochemistry field of protein structure-function relationships and experts in other fields, such as chemistry, nanotechnology, and plant sciences.