GFI1 tethers the NuRD complex to open and transcriptionally active chromatin in myeloid progenitors

• Published in: Communications biology 2021-12, Vol.4 (1), p.1356-1356, Article 1356
• Main Authors: Helness, Anne, Fraszczak, Jennifer, Joly-Beauparlant, Charles, Bagci, Halil, Trahan, Christian, Arman, Kaifee, Shooshtarizadeh, Peiman, Chen, Riyan, Ayoub, Marina, Côté, Jean-François, Oeffinger, Marlene, Droit, Arnaud, Möröy, Tarik
• Format: Article
• Language: English
• Subjects: 38/23; 38/39; 45/15; 45/91; 631/337; 631/337/100; 82/58; Animals; Binding sites; Biology; Biomedical and Life Sciences; Chromatin - metabolism; Chromatin remodeling; Deoxyribonucleic acid; DNA; DNA helicase; DNA-Binding Proteins - genetics; DNA-Binding Proteins - metabolism; Enhancers; Gene regulation; Histone deacetylase; Histones; Immune response; Interferon regulatory factor 1; Leukocytes (neutrophilic); Life Sciences; Mi-2 Nucleosome Remodeling and Deacetylase Complex - genetics; Mi-2 Nucleosome Remodeling and Deacetylase Complex - metabolism; Mice; Molecular modelling; Monocytes; Myeloid Progenitor Cells - metabolism; Neutrophils; NuRD protein; Progenitor cells; Promoters; Transcription; Transcription Factors - genetics; Transcription Factors - metabolism; Transcription, Genetic
• ISSN: 2399-3642; 2399-3642
• DOI: 10.1038/s42003-021-02889-2

Growth factor indepdendent 1 (GFI1) is a SNAG-domain, DNA binding transcriptional repressor which controls myeloid differentiation through molecular mechanisms and co-factors that still remain to be clearly identified. Here we show that GFI1 associates with the chromodomain helicase DNA binding protein 4 (CHD4) and other components of the Nucleosome remodeling and deacetylase (NuRD) complex. In granulo-monocytic precursors, GFI1, CHD4 or GFI1/CHD4 complexes occupy sites enriched for histone marks associated with active transcription suggesting that GFI1 recruits the NuRD complex to target genes regulated by active or bivalent promoters and enhancers. GFI1 and GFI1/CHD4 complexes occupy promoters that are either enriched for IRF1 or SPI1 consensus binding sites, respectively. During neutrophil differentiation, chromatin closure and depletion of H3K4me2 occurs at different degrees depending on whether GFI1, CHD4 or both are present, indicating that GFI1 is more efficient in depleting of H3K4me2 and -me1 marks when associated with CHD4. Our data suggest that GFI1/CHD4 complexes regulate histone modifications differentially to enable regulation of target genes affecting immune response, nucleosome organization or cellular metabolic processes and that both the target gene specificity and the activity of GFI1 during myeloid differentiation depends on the presence of chromatin remodeling complexes. Helness et al. show that GFI1/CHD4 complexes critically regulate chromatin accessibility and histone modifications to regulate target genes affecting diverse cellular processes in neutrophils. Their results provide further insight into the molecular network operated by GFI1 for neutrophil differentiation programs.