Macrophage Infiltration Correlated with IFI16, EGR1 and MX1 Expression in Renal Tubular Epithelial Cells Within Lupus Nephritis-Associated Tubulointerstitial Injury via Bioinformatics Analysis

• Published in: Journal of inflammation research 2024-01, Vol.17, p.11469-11483
• Main Authors: Tian, Ming, Tang, Min, Chen, Caiming, Lin, Yufang, Chen, Hong, Xu, Yanfang
• Format: Article
• Language: English
• Subjects: Adaptive immunity; Algorithms; Antigens; Bioinformatics; Biopsy; Cells; Datasets; Disease; EGR-1 protein; egr1; Epithelial cells; Gene expression; Hematuria; ifi16; immune infiltration; Immunity (Disease); Immunofluorescence; Infiltration; Inflammation; Laboratory animals; Lupus; Lupus nephritis; Machine learning; Macrophages; mx1; Original Research; Pathogenesis; Pathology; Pertussis; Proteins; Support vector machines; Systemic lupus erythematosus; Therapeutic targets; tubulointerstitial injury; Western blotting
• ISSN: 1178-7031; 1178-7031
• DOI: 10.2147/JIR.S489087

A comprehensive bioinformatics analysis was conducted to investigate potential new diagnostic biomarkers and immune infiltration characteristics associated with tubulointerstitial injury in lupus nephritis (LN), and to examine possible correlations between key genes and infiltrating immune cells. The GSE32591, GSE113342, and GSE200306 datasets were downloaded from the Gene Expression Omnibus database and differentially expressed genes (DEGs) were identified in the pooled dataset. Support vector machine-recursive feature elimination analysis and the least absolute shrinkage and selection operator regression model were used to screen for possible markers, and the compositional patterns of the 22 types of immune cell fractions in LN were determined using CIBERSORT. Finally, Western blotting, quantitative real-time polymerase chain reaction, and multiple immunofluorescence methods were used to confirm the significance of these feature genes in MRL/lpr mice and patients with LN. Seventeen DEGs were identified, of which 11 were considerably upregulated and six were markedly downregulated. Kyoto Encyclopedia of Genes and Genomes pathway analysis revealed significant enrichment in pertussis, complement and coagulation cascades, systemic lupus erythematosus, and other pathways. Based on the machine learning results, we identified and were key diagnostic genes for tubulointerstitial injury associated with LN. Immune cell infiltration analysis revealed that and were associated with M1 macrophages. Finally, the association between and macrophages in MRL/lpr mice and patients with LN were verified. This study suggests that and which are highly expressed in renal tubular epithelial cells in LN and are associated with macrophage infiltration, may be a novel diagnostic and therapeutic target.