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Construction of a multi-epitope protein for human Toxocara canis detection: Immunoinformatics approach multi-epitope construct for T. canis serodiagnosis
Toxocariasis is a global public health concern, particularly in children. Serological diagnosis of the infection is routinely applied to detect specific anti-Toxocara antibodies. Current in silico study was contrived to design a multi-epitope protein using a wide array of immunoinformatics web serve...
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Published in: | Informatics in medicine unlocked 2021, Vol.26, p.100732, Article 100732 |
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description | Toxocariasis is a global public health concern, particularly in children. Serological diagnosis of the infection is routinely applied to detect specific anti-Toxocara antibodies. Current in silico study was contrived to design a multi-epitope protein using a wide array of immunoinformatics web servers for improved serodiagnosis. Top, high-ranked B-cell epitopes as well as IL-4 and IL-10 inducing epitopes were predicted, screened and selected to construct the chimeric protein. Then, prediction of antigenicity, solubility and physico-chemical features, secondary and tertiary structures, 3D model refinement and validations was done using various web servers. Finally, conformational B-cell epitopes were determined for possible protein-antibody interactions. Moreover, the final construct was subjected to disulfide engineering, codon adaptation, in silico cloning as well as molecular docking with human TLR-2 molecule. In conclusion, this multi-epitope construct needs to be evaluated experimentally, in order to be used in commercial serodiagnostic kits.
•This an in-depth in silico analysis on Toxocara canis TES antigens.•Potential B-cell, IL-4 and IL-10 inducing epitopes were determined in this study.•The designed multi-epitope protein was evaluated for many biochemical characteristics.•Bioinformatics revealed several interesting aspects of the protein as a diagnostic candidate. |
doi_str_mv | 10.1016/j.imu.2021.100732 |
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•This an in-depth in silico analysis on Toxocara canis TES antigens.•Potential B-cell, IL-4 and IL-10 inducing epitopes were determined in this study.•The designed multi-epitope protein was evaluated for many biochemical characteristics.•Bioinformatics revealed several interesting aspects of the protein as a diagnostic candidate.</description><identifier>ISSN: 2352-9148</identifier><identifier>EISSN: 2352-9148</identifier><identifier>DOI: 10.1016/j.imu.2021.100732</identifier><language>eng</language><publisher>Elsevier Ltd</publisher><subject>Immunoinformatics ; Multi-epitope ; Serodiagnosis ; Synthetic protein ; Toxocara canis</subject><ispartof>Informatics in medicine unlocked, 2021, Vol.26, p.100732, Article 100732</ispartof><rights>2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3212-91a1d3b74af8a165d2dcf768911951015005f572430f97975accb2e3a05d0ebe3</citedby><cites>FETCH-LOGICAL-c3212-91a1d3b74af8a165d2dcf768911951015005f572430f97975accb2e3a05d0ebe3</cites><orcidid>0000-0002-4005-2687</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S2352914821002112$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,3549,4024,27923,27924,27925,45780</link.rule.ids></links><search><creatorcontrib>Shams, Morteza</creatorcontrib><creatorcontrib>Nourmohammadi, Hassan</creatorcontrib><creatorcontrib>Asghari, Ali</creatorcontrib><creatorcontrib>Basati, Gholam</creatorcontrib><creatorcontrib>Majidiani, Hamidreza</creatorcontrib><creatorcontrib>Naserifar, Razi</creatorcontrib><creatorcontrib>Irannejad, Hamid</creatorcontrib><title>Construction of a multi-epitope protein for human Toxocara canis detection: Immunoinformatics approach multi-epitope construct for T. canis serodiagnosis</title><title>Informatics in medicine unlocked</title><description>Toxocariasis is a global public health concern, particularly in children. Serological diagnosis of the infection is routinely applied to detect specific anti-Toxocara antibodies. Current in silico study was contrived to design a multi-epitope protein using a wide array of immunoinformatics web servers for improved serodiagnosis. Top, high-ranked B-cell epitopes as well as IL-4 and IL-10 inducing epitopes were predicted, screened and selected to construct the chimeric protein. Then, prediction of antigenicity, solubility and physico-chemical features, secondary and tertiary structures, 3D model refinement and validations was done using various web servers. Finally, conformational B-cell epitopes were determined for possible protein-antibody interactions. Moreover, the final construct was subjected to disulfide engineering, codon adaptation, in silico cloning as well as molecular docking with human TLR-2 molecule. In conclusion, this multi-epitope construct needs to be evaluated experimentally, in order to be used in commercial serodiagnostic kits.
•This an in-depth in silico analysis on Toxocara canis TES antigens.•Potential B-cell, IL-4 and IL-10 inducing epitopes were determined in this study.•The designed multi-epitope protein was evaluated for many biochemical characteristics.•Bioinformatics revealed several interesting aspects of the protein as a diagnostic candidate.</description><subject>Immunoinformatics</subject><subject>Multi-epitope</subject><subject>Serodiagnosis</subject><subject>Synthetic protein</subject><subject>Toxocara canis</subject><issn>2352-9148</issn><issn>2352-9148</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNp9kc9uGyEQxldRKzVK8wC98QJ2GVgWb3qqrP6xFKkX94xmYUiwvLCC3ap9lLxtsZ1WUQ89MaD5fsM3X9O8A74GDt37wzqMy1pwAfXOtRRXzbWQSqx6aDevXtRvmttSDpxz0J1UWl03T9sUy5wXO4cUWfIM2bgc57CiKcxpIjblNFOIzKfMHpcRI9unn8liRmYxhsIczXRW37HdOC4xhVh7R5yDLQynqkf7-A_U_hl6xu7Xz6hCObmADzGVUN42rz0eC90-nzfN98-f9tuvq_tvX3bbj_crKwWcbCE4OegW_QahU04463W36QF6VbejOFdeadFK7nvda4XWDoIkcuU4DSRvmt2F6xIezJTDiPmXSRjM-SHlB4O5mjmSqVxqPQ6cBG8763pQAKTRcgeD3KjKggvL5lRKJv-XB9ycojIHU6Myp6jMJaqq-XDRUDX5I1A2xQaKllzIdbH1F-E_6t9uf59N</recordid><startdate>2021</startdate><enddate>2021</enddate><creator>Shams, Morteza</creator><creator>Nourmohammadi, Hassan</creator><creator>Asghari, Ali</creator><creator>Basati, Gholam</creator><creator>Majidiani, Hamidreza</creator><creator>Naserifar, Razi</creator><creator>Irannejad, Hamid</creator><general>Elsevier Ltd</general><general>Elsevier</general><scope>6I.</scope><scope>AAFTH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-4005-2687</orcidid></search><sort><creationdate>2021</creationdate><title>Construction of a multi-epitope protein for human Toxocara canis detection: Immunoinformatics approach multi-epitope construct for T. canis serodiagnosis</title><author>Shams, Morteza ; Nourmohammadi, Hassan ; Asghari, Ali ; Basati, Gholam ; Majidiani, Hamidreza ; Naserifar, Razi ; Irannejad, Hamid</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3212-91a1d3b74af8a165d2dcf768911951015005f572430f97975accb2e3a05d0ebe3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Immunoinformatics</topic><topic>Multi-epitope</topic><topic>Serodiagnosis</topic><topic>Synthetic protein</topic><topic>Toxocara canis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shams, Morteza</creatorcontrib><creatorcontrib>Nourmohammadi, Hassan</creatorcontrib><creatorcontrib>Asghari, Ali</creatorcontrib><creatorcontrib>Basati, Gholam</creatorcontrib><creatorcontrib>Majidiani, Hamidreza</creatorcontrib><creatorcontrib>Naserifar, Razi</creatorcontrib><creatorcontrib>Irannejad, Hamid</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>CrossRef</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Informatics in medicine unlocked</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shams, Morteza</au><au>Nourmohammadi, Hassan</au><au>Asghari, Ali</au><au>Basati, Gholam</au><au>Majidiani, Hamidreza</au><au>Naserifar, Razi</au><au>Irannejad, Hamid</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Construction of a multi-epitope protein for human Toxocara canis detection: Immunoinformatics approach multi-epitope construct for T. canis serodiagnosis</atitle><jtitle>Informatics in medicine unlocked</jtitle><date>2021</date><risdate>2021</risdate><volume>26</volume><spage>100732</spage><pages>100732-</pages><artnum>100732</artnum><issn>2352-9148</issn><eissn>2352-9148</eissn><abstract>Toxocariasis is a global public health concern, particularly in children. Serological diagnosis of the infection is routinely applied to detect specific anti-Toxocara antibodies. Current in silico study was contrived to design a multi-epitope protein using a wide array of immunoinformatics web servers for improved serodiagnosis. Top, high-ranked B-cell epitopes as well as IL-4 and IL-10 inducing epitopes were predicted, screened and selected to construct the chimeric protein. Then, prediction of antigenicity, solubility and physico-chemical features, secondary and tertiary structures, 3D model refinement and validations was done using various web servers. Finally, conformational B-cell epitopes were determined for possible protein-antibody interactions. Moreover, the final construct was subjected to disulfide engineering, codon adaptation, in silico cloning as well as molecular docking with human TLR-2 molecule. In conclusion, this multi-epitope construct needs to be evaluated experimentally, in order to be used in commercial serodiagnostic kits.
•This an in-depth in silico analysis on Toxocara canis TES antigens.•Potential B-cell, IL-4 and IL-10 inducing epitopes were determined in this study.•The designed multi-epitope protein was evaluated for many biochemical characteristics.•Bioinformatics revealed several interesting aspects of the protein as a diagnostic candidate.</abstract><pub>Elsevier Ltd</pub><doi>10.1016/j.imu.2021.100732</doi><orcidid>https://orcid.org/0000-0002-4005-2687</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Immunoinformatics Multi-epitope Serodiagnosis Synthetic protein Toxocara canis |
title | Construction of a multi-epitope protein for human Toxocara canis detection: Immunoinformatics approach multi-epitope construct for T. canis serodiagnosis |
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