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Molecular record for the first authentication of Isaria cicadae from Vietnam
The entomopathogenic fungus T011, parasitizing on nymph of Cicada, collected in the coffee garden in Dak Lak Province, Vietnam, was preliminarily morphologically identified as , belonged to order Hypocreales and family Clavicipitaceae. To ensure the authenticity of T011, phylogenetic analysis of the...
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Published in: | Open life sciences 2021-07, Vol.16 (1), p.711-718 |
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description | The entomopathogenic fungus T011, parasitizing on nymph of Cicada, collected in the coffee garden in Dak Lak Province, Vietnam, was preliminarily morphologically identified as
, belonged to order Hypocreales and family Clavicipitaceae. To ensure the authenticity of T011, phylogenetic analysis of the concatenated set of multiple genes including
,
,
,
, and
was applied to support the identification. Genomic DNA was isolated from dried sample T011. The PCR assay sequencing was applied to amplify
,
,
,
, and
gene. For phylogenetic analysis, the concatenated data of both target gens were constructed with MEGAX with a 1,000 replicate bootstrap based on the neighbor-joining, maximum likelihood, maximum parsimony method. As the result, the concatenated data containing 62 sequences belonged to order Hypocreales, families Clavicipitaceae, and 2 outgroup sequences belonged to order Hypocreales, genus
. The phylogenetic analysis results indicated that T011 was accepted at subclade
and significantly formed the monophyletic group with referent
(Telemorph of
) with high bootstrap value. The phylogenetically analyzed result was strongly supported by our morphological analysis described as the
. In summary, phylogenetic analyses based on the concatenated dataset were successfully applied to strengthen the identification of T011 as |
doi_str_mv | 10.1515/biol-2021-0074 |
format | article |
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, belonged to order Hypocreales and family Clavicipitaceae. To ensure the authenticity of T011, phylogenetic analysis of the concatenated set of multiple genes including
,
,
,
, and
was applied to support the identification. Genomic DNA was isolated from dried sample T011. The PCR assay sequencing was applied to amplify
,
,
,
, and
gene. For phylogenetic analysis, the concatenated data of both target gens were constructed with MEGAX with a 1,000 replicate bootstrap based on the neighbor-joining, maximum likelihood, maximum parsimony method. As the result, the concatenated data containing 62 sequences belonged to order Hypocreales, families Clavicipitaceae, and 2 outgroup sequences belonged to order Hypocreales, genus
. The phylogenetic analysis results indicated that T011 was accepted at subclade
and significantly formed the monophyletic group with referent
(Telemorph of
) with high bootstrap value. The phylogenetically analyzed result was strongly supported by our morphological analysis described as the
. In summary, phylogenetic analyses based on the concatenated dataset were successfully applied to strengthen the identification of T011 as</description><identifier>ISSN: 2391-5412</identifier><identifier>EISSN: 2391-5412</identifier><identifier>DOI: 10.1515/biol-2021-0074</identifier><identifier>PMID: 34307886</identifier><language>eng</language><publisher>De Gruyter</publisher><subject>isaria cicadae ; nuclear large ribosomal subunit ; nuclear small ribosomal subunit ; phylogeny</subject><ispartof>Open life sciences, 2021-07, Vol.16 (1), p.711-718</ispartof><rights>2021 Thuan Duc Lao ., published by De Gruyter 2021 Thuan Duc Lao et al., published by De Gruyter</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c441t-eb9d4ddcb6dc6018138dd731cd1351bdb74cfbc0f0bbc383c6bf47649c6db9a63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284333/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284333/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793,67158,68942</link.rule.ids></links><search><creatorcontrib>Lao, Thuan Duc</creatorcontrib><creatorcontrib>Van Trinh, Hanh</creatorcontrib><creatorcontrib>Vuong, Loi</creatorcontrib><creatorcontrib>Tien Vu, Luyen</creatorcontrib><creatorcontrib>Huyen Le, Thuy Ai</creatorcontrib><creatorcontrib>Dinh, Hiep Minh</creatorcontrib><creatorcontrib>Truong, Nguyen Binh</creatorcontrib><title>Molecular record for the first authentication of Isaria cicadae from Vietnam</title><title>Open life sciences</title><description>The entomopathogenic fungus T011, parasitizing on nymph of Cicada, collected in the coffee garden in Dak Lak Province, Vietnam, was preliminarily morphologically identified as
, belonged to order Hypocreales and family Clavicipitaceae. To ensure the authenticity of T011, phylogenetic analysis of the concatenated set of multiple genes including
,
,
,
, and
was applied to support the identification. Genomic DNA was isolated from dried sample T011. The PCR assay sequencing was applied to amplify
,
,
,
, and
gene. For phylogenetic analysis, the concatenated data of both target gens were constructed with MEGAX with a 1,000 replicate bootstrap based on the neighbor-joining, maximum likelihood, maximum parsimony method. As the result, the concatenated data containing 62 sequences belonged to order Hypocreales, families Clavicipitaceae, and 2 outgroup sequences belonged to order Hypocreales, genus
. The phylogenetic analysis results indicated that T011 was accepted at subclade
and significantly formed the monophyletic group with referent
(Telemorph of
) with high bootstrap value. The phylogenetically analyzed result was strongly supported by our morphological analysis described as the
. In summary, phylogenetic analyses based on the concatenated dataset were successfully applied to strengthen the identification of T011 as</description><subject>isaria cicadae</subject><subject>nuclear large ribosomal subunit</subject><subject>nuclear small ribosomal subunit</subject><subject>phylogeny</subject><issn>2391-5412</issn><issn>2391-5412</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNp1UU1v1DAQtSoQrZZeOefIJcUTf8SRKiRU8bHSol4KV2v8tfUqiYudgPrv8bIVogd88dPMe8-eeYS8AXoFAsQ7E9PYdrSDltKen5GLjg3QCg7di3_wObks5UApBcE7QeUrcs44o71S8oLsvqbR23XE3GRvU3ZNSLlZ7n0TYi5Lg2vF8xItLjHNTQrNtmCO2NhaclhpOU3N9-iXGafX5GXAsfjLp3tDvn36eHfzpd3dft7efNi1lnNYWm8Gx52zRjorKShgyrmegXXABBhnem6DsTRQYyxTzEoTeC_5YKUzA0q2IduTr0t40A85TpgfdcKo_xRS3mvM9c-j1wG5pAMTEsBzLwF7qpQZKDoKENRQvd6fvB5WM3ln67AZx2emzztzvNf79FOrTnFWz4a8fTLI6cfqy6KnWKwfR5x9WovuhBB138BFpV6dqDanUrIPf58Bqo-J6mOi-pioPiZaBdcnwS8cF5-d3-f1sQJ9SGue64r_IwQJPQD7DWopp4w</recordid><startdate>20210715</startdate><enddate>20210715</enddate><creator>Lao, Thuan Duc</creator><creator>Van Trinh, Hanh</creator><creator>Vuong, Loi</creator><creator>Tien Vu, Luyen</creator><creator>Huyen Le, Thuy Ai</creator><creator>Dinh, Hiep Minh</creator><creator>Truong, Nguyen Binh</creator><general>De Gruyter</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20210715</creationdate><title>Molecular record for the first authentication of Isaria cicadae from Vietnam</title><author>Lao, Thuan Duc ; Van Trinh, Hanh ; Vuong, Loi ; Tien Vu, Luyen ; Huyen Le, Thuy Ai ; Dinh, Hiep Minh ; Truong, Nguyen Binh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c441t-eb9d4ddcb6dc6018138dd731cd1351bdb74cfbc0f0bbc383c6bf47649c6db9a63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>isaria cicadae</topic><topic>nuclear large ribosomal subunit</topic><topic>nuclear small ribosomal subunit</topic><topic>phylogeny</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lao, Thuan Duc</creatorcontrib><creatorcontrib>Van Trinh, Hanh</creatorcontrib><creatorcontrib>Vuong, Loi</creatorcontrib><creatorcontrib>Tien Vu, Luyen</creatorcontrib><creatorcontrib>Huyen Le, Thuy Ai</creatorcontrib><creatorcontrib>Dinh, Hiep Minh</creatorcontrib><creatorcontrib>Truong, Nguyen Binh</creatorcontrib><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Open Access: DOAJ - Directory of Open Access Journals</collection><jtitle>Open life sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lao, Thuan Duc</au><au>Van Trinh, Hanh</au><au>Vuong, Loi</au><au>Tien Vu, Luyen</au><au>Huyen Le, Thuy Ai</au><au>Dinh, Hiep Minh</au><au>Truong, Nguyen Binh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Molecular record for the first authentication of Isaria cicadae from Vietnam</atitle><jtitle>Open life sciences</jtitle><date>2021-07-15</date><risdate>2021</risdate><volume>16</volume><issue>1</issue><spage>711</spage><epage>718</epage><pages>711-718</pages><issn>2391-5412</issn><eissn>2391-5412</eissn><abstract>The entomopathogenic fungus T011, parasitizing on nymph of Cicada, collected in the coffee garden in Dak Lak Province, Vietnam, was preliminarily morphologically identified as
, belonged to order Hypocreales and family Clavicipitaceae. To ensure the authenticity of T011, phylogenetic analysis of the concatenated set of multiple genes including
,
,
,
, and
was applied to support the identification. Genomic DNA was isolated from dried sample T011. The PCR assay sequencing was applied to amplify
,
,
,
, and
gene. For phylogenetic analysis, the concatenated data of both target gens were constructed with MEGAX with a 1,000 replicate bootstrap based on the neighbor-joining, maximum likelihood, maximum parsimony method. As the result, the concatenated data containing 62 sequences belonged to order Hypocreales, families Clavicipitaceae, and 2 outgroup sequences belonged to order Hypocreales, genus
. The phylogenetic analysis results indicated that T011 was accepted at subclade
and significantly formed the monophyletic group with referent
(Telemorph of
) with high bootstrap value. The phylogenetically analyzed result was strongly supported by our morphological analysis described as the
. In summary, phylogenetic analyses based on the concatenated dataset were successfully applied to strengthen the identification of T011 as</abstract><pub>De Gruyter</pub><pmid>34307886</pmid><doi>10.1515/biol-2021-0074</doi><tpages>8</tpages><oa>free_for_read</oa></addata></record> |
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source | NCBI_PubMed Central(免费); Walter De Gruyter: Open Access Journals |
subjects | isaria cicadae nuclear large ribosomal subunit nuclear small ribosomal subunit phylogeny |
title | Molecular record for the first authentication of Isaria cicadae from Vietnam |
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