A web-based database server using 43,710 public RNA-seq samples for the analysis of gene expression and alternative splicing in livestock animals

Livestock animals is of great significance in agricultural production. However, the role of specific gene expression, especially alternative splicing in determining phenotype, is not well understood. The livestock research community needs a gene expression and alternative splicing database contribut...

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Bibliographic Details
Published in:BMC genomics 2022-10, Vol.23 (1), p.1-706, Article 706
Main Authors: Liu, Jinding, Lang, Kun, Tan, Suxu, Jie, Wencai, Zhu, Yihua, Huang, Shiqing, Huang, Wen
Format: Article
Language:English
Subjects:
Agricultural production
Agricultural research
Alternative splicing
Animal species
Animals
Annotations
Cattle
Datasets
File servers
Gene expression
Genetic aspects
Genetic improvement
Genomes
Genomics
Livestock
Network analysis
Online databases
Ontology
Phenotypes
Proteins
Ribonucleic acid
RNA
RNA sequencing
RNA splicing
RNA-seq
Servers
Splicing
Wildlife conservation
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Summary:Livestock animals is of great significance in agricultural production. However, the role of specific gene expression, especially alternative splicing in determining phenotype, is not well understood. The livestock research community needs a gene expression and alternative splicing database contributing to livestock genetic improvement. LivestockExp covers by far the largest number of livestock animal species and RNA-seq samples and provides a valuable data resource and analysis platform for the convenient utilization of public RNA-seq datasets.
ISSN:1471-2164
1471-2164
DOI:10.1186/s12864-022-08881-2