Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses

Fargesia Franchet emend . Yi is closely allied with Thamnocalamus Munro but differs in many major morphological characteristics. Based on traditional morphological characters, it is difficult to differentiate these two genera. The current study measured 19 species in these two genera to determine wh...

Full description

Saved in:
Bibliographic Details
Published in:Scientific reports 2017-06, Vol.7 (1), p.4192-12, Article 4192
Main Authors: Liu, Shiliang, Yang, Rongjie, Yang, Jun, Yi, Tongpei, Song, Huixing, Jiang, Mingyan, Tripathi, Durgesh K., Ma, Mingdong, Chen, Qibing
Format: Article
Language:English
Subjects:
631/181/2480
631/449/2669
Cluster analysis
Humanities and Social Sciences
Morphology
multidisciplinary
Neural networks
Physical characteristics
Sampling
Science
Science (multidisciplinary)
Species
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c540t-758cb4a2c46fd009d1f3ec3041c2b41974d5a5b33ba80e7a522539ff998ef5193
cites cdi_FETCH-LOGICAL-c540t-758cb4a2c46fd009d1f3ec3041c2b41974d5a5b33ba80e7a522539ff998ef5193
container_end_page 12
container_issue 1
container_start_page 4192
container_title Scientific reports
container_volume 7
creator Liu, Shiliang
Yang, Rongjie
Yang, Jun
Yi, Tongpei
Song, Huixing
Jiang, Mingyan
Tripathi, Durgesh K.
Ma, Mingdong
Chen, Qibing
description Fargesia Franchet emend . Yi is closely allied with Thamnocalamus Munro but differs in many major morphological characteristics. Based on traditional morphological characters, it is difficult to differentiate these two genera. The current study measured 19 species in these two genera to determine whether variations in 12 categories of major characters are continuous. In addition, a self-organizing map (SOM) and cluster analysis were used together to reveal whether the known species of Fargesia represent discontinuous sampling of Thamnocalamus . The results show that 46 morphological characteristics exhibited high variation at the generic and species levels. In addition, the cluster analysis showed that 32 morphological characteristics of Thamnocalamus and Fargesia were divided between two species and well separated from the outgroup. Additionally, significant differences ( P  
doi_str_mv 10.1038/s41598-017-04613-9
format article
fullrecord <record><control><sourceid>proquest_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_fc45f23ace6c443983a4bedc94f6bff3</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_fc45f23ace6c443983a4bedc94f6bff3</doaj_id><sourcerecordid>1955970962</sourcerecordid><originalsourceid>FETCH-LOGICAL-c540t-758cb4a2c46fd009d1f3ec3041c2b41974d5a5b33ba80e7a522539ff998ef5193</originalsourceid><addsrcrecordid>eNp1Uk1v1DAUjBCIVqV_gAOyxKVIpPgziTkgQWGhUhEcyoGT5TjPWZfEXuxkUX8LfxZvU6otEr7YejNvnudpiuIpwacEs-ZV4kTIpsSkLjGvCCvlg-KQYi5Kyih9uPc-KI5TusL5CCo5kY-LA9pUuUfQw-L3e2ctRPCT05PzPbpc69EHowc9zgl9nn0MyMYwopWOPSSn0Spqb9YwIRjBd6fou0Mn7_TYzim4DjS8RF-DNvnx4jXyYQsDgm0GvIFFaAxxsw5D6F2egrTvkIc56qH0MP0K8Ucu6eE6QXpSPLJ6SHB8ex8V31YfLs8-lRdfPp6fvb0ojeB4KmvRmJZranhlO4xlRywDwzAnhrbZb807oUXLWKsbDLUWlAomrZWyASuIZEfF-aLbBX2lNtGNOl6roJ26KYTYKx0nZwZQ1nBhKcv2KsM5kw3TvIXOSG6r1lqWtd4sWpu5HTOQF5ut3RO9j3i3Vn3YKsEb2kiaBU5uBWL4OUOa1OiSgWHQHsKcFJGE5bm83lGf_0O9CnPMy9uxhJA1ltWORReWiSGlCPbuMwSrXZTUEiWVo6RuoqR2K3m2b-Ou5W9wMoEthJQh30Pcm_1_2T_kpddf</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1955970962</pqid></control><display><type>article</type><title>Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses</title><source>Publicly Available Content Database</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><source>Springer Nature - nature.com Journals - Fully Open Access</source><creator>Liu, Shiliang ; Yang, Rongjie ; Yang, Jun ; Yi, Tongpei ; Song, Huixing ; Jiang, Mingyan ; Tripathi, Durgesh K. ; Ma, Mingdong ; Chen, Qibing</creator><creatorcontrib>Liu, Shiliang ; Yang, Rongjie ; Yang, Jun ; Yi, Tongpei ; Song, Huixing ; Jiang, Mingyan ; Tripathi, Durgesh K. ; Ma, Mingdong ; Chen, Qibing</creatorcontrib><description>Fargesia Franchet emend . Yi is closely allied with Thamnocalamus Munro but differs in many major morphological characteristics. Based on traditional morphological characters, it is difficult to differentiate these two genera. The current study measured 19 species in these two genera to determine whether variations in 12 categories of major characters are continuous. In addition, a self-organizing map (SOM) and cluster analysis were used together to reveal whether the known species of Fargesia represent discontinuous sampling of Thamnocalamus . The results show that 46 morphological characteristics exhibited high variation at the generic and species levels. In addition, the cluster analysis showed that 32 morphological characteristics of Thamnocalamus and Fargesia were divided between two species and well separated from the outgroup. Additionally, significant differences ( P  &lt; 0.01) were observed in the reproductive structures between these two genera. The unrooted dendrogram, which was based on the SOM neural network, shows the same results as the cluster analysis of morphological characteristics. These data indicate that Fargesia is not a result of discontinuous sampling of Thamnocalamus ; thus, Fargesia should not be treated as a synonym for Thamnocalamus .</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-017-04613-9</identifier><identifier>PMID: 28646152</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/181/2480 ; 631/449/2669 ; Cluster analysis ; Humanities and Social Sciences ; Morphology ; multidisciplinary ; Neural networks ; Physical characteristics ; Sampling ; Science ; Science (multidisciplinary) ; Species</subject><ispartof>Scientific reports, 2017-06, Vol.7 (1), p.4192-12, Article 4192</ispartof><rights>The Author(s) 2017</rights><rights>Copyright Nature Publishing Group Jun 2017</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c540t-758cb4a2c46fd009d1f3ec3041c2b41974d5a5b33ba80e7a522539ff998ef5193</citedby><cites>FETCH-LOGICAL-c540t-758cb4a2c46fd009d1f3ec3041c2b41974d5a5b33ba80e7a522539ff998ef5193</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/1955970962/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/1955970962?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,74998</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28646152$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liu, Shiliang</creatorcontrib><creatorcontrib>Yang, Rongjie</creatorcontrib><creatorcontrib>Yang, Jun</creatorcontrib><creatorcontrib>Yi, Tongpei</creatorcontrib><creatorcontrib>Song, Huixing</creatorcontrib><creatorcontrib>Jiang, Mingyan</creatorcontrib><creatorcontrib>Tripathi, Durgesh K.</creatorcontrib><creatorcontrib>Ma, Mingdong</creatorcontrib><creatorcontrib>Chen, Qibing</creatorcontrib><title>Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Fargesia Franchet emend . Yi is closely allied with Thamnocalamus Munro but differs in many major morphological characteristics. Based on traditional morphological characters, it is difficult to differentiate these two genera. The current study measured 19 species in these two genera to determine whether variations in 12 categories of major characters are continuous. In addition, a self-organizing map (SOM) and cluster analysis were used together to reveal whether the known species of Fargesia represent discontinuous sampling of Thamnocalamus . The results show that 46 morphological characteristics exhibited high variation at the generic and species levels. In addition, the cluster analysis showed that 32 morphological characteristics of Thamnocalamus and Fargesia were divided between two species and well separated from the outgroup. Additionally, significant differences ( P  &lt; 0.01) were observed in the reproductive structures between these two genera. The unrooted dendrogram, which was based on the SOM neural network, shows the same results as the cluster analysis of morphological characteristics. These data indicate that Fargesia is not a result of discontinuous sampling of Thamnocalamus ; thus, Fargesia should not be treated as a synonym for Thamnocalamus .</description><subject>631/181/2480</subject><subject>631/449/2669</subject><subject>Cluster analysis</subject><subject>Humanities and Social Sciences</subject><subject>Morphology</subject><subject>multidisciplinary</subject><subject>Neural networks</subject><subject>Physical characteristics</subject><subject>Sampling</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Species</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNp1Uk1v1DAUjBCIVqV_gAOyxKVIpPgziTkgQWGhUhEcyoGT5TjPWZfEXuxkUX8LfxZvU6otEr7YejNvnudpiuIpwacEs-ZV4kTIpsSkLjGvCCvlg-KQYi5Kyih9uPc-KI5TusL5CCo5kY-LA9pUuUfQw-L3e2ctRPCT05PzPbpc69EHowc9zgl9nn0MyMYwopWOPSSn0Spqb9YwIRjBd6fou0Mn7_TYzim4DjS8RF-DNvnx4jXyYQsDgm0GvIFFaAxxsw5D6F2egrTvkIc56qH0MP0K8Ucu6eE6QXpSPLJ6SHB8ex8V31YfLs8-lRdfPp6fvb0ojeB4KmvRmJZranhlO4xlRywDwzAnhrbZb807oUXLWKsbDLUWlAomrZWyASuIZEfF-aLbBX2lNtGNOl6roJ26KYTYKx0nZwZQ1nBhKcv2KsM5kw3TvIXOSG6r1lqWtd4sWpu5HTOQF5ut3RO9j3i3Vn3YKsEb2kiaBU5uBWL4OUOa1OiSgWHQHsKcFJGE5bm83lGf_0O9CnPMy9uxhJA1ltWORReWiSGlCPbuMwSrXZTUEiWVo6RuoqR2K3m2b-Ou5W9wMoEthJQh30Pcm_1_2T_kpddf</recordid><startdate>20170623</startdate><enddate>20170623</enddate><creator>Liu, Shiliang</creator><creator>Yang, Rongjie</creator><creator>Yang, Jun</creator><creator>Yi, Tongpei</creator><creator>Song, Huixing</creator><creator>Jiang, Mingyan</creator><creator>Tripathi, Durgesh K.</creator><creator>Ma, Mingdong</creator><creator>Chen, Qibing</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><general>Nature Portfolio</general><scope>C6C</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20170623</creationdate><title>Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses</title><author>Liu, Shiliang ; Yang, Rongjie ; Yang, Jun ; Yi, Tongpei ; Song, Huixing ; Jiang, Mingyan ; Tripathi, Durgesh K. ; Ma, Mingdong ; Chen, Qibing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c540t-758cb4a2c46fd009d1f3ec3041c2b41974d5a5b33ba80e7a522539ff998ef5193</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>631/181/2480</topic><topic>631/449/2669</topic><topic>Cluster analysis</topic><topic>Humanities and Social Sciences</topic><topic>Morphology</topic><topic>multidisciplinary</topic><topic>Neural networks</topic><topic>Physical characteristics</topic><topic>Sampling</topic><topic>Science</topic><topic>Science (multidisciplinary)</topic><topic>Species</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Shiliang</creatorcontrib><creatorcontrib>Yang, Rongjie</creatorcontrib><creatorcontrib>Yang, Jun</creatorcontrib><creatorcontrib>Yi, Tongpei</creatorcontrib><creatorcontrib>Song, Huixing</creatorcontrib><creatorcontrib>Jiang, Mingyan</creatorcontrib><creatorcontrib>Tripathi, Durgesh K.</creatorcontrib><creatorcontrib>Ma, Mingdong</creatorcontrib><creatorcontrib>Chen, Qibing</creatorcontrib><collection>SpringerOpen(OpenAccess)</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health &amp; Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Shiliang</au><au>Yang, Rongjie</au><au>Yang, Jun</au><au>Yi, Tongpei</au><au>Song, Huixing</au><au>Jiang, Mingyan</au><au>Tripathi, Durgesh K.</au><au>Ma, Mingdong</au><au>Chen, Qibing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2017-06-23</date><risdate>2017</risdate><volume>7</volume><issue>1</issue><spage>4192</spage><epage>12</epage><pages>4192-12</pages><artnum>4192</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Fargesia Franchet emend . Yi is closely allied with Thamnocalamus Munro but differs in many major morphological characteristics. Based on traditional morphological characters, it is difficult to differentiate these two genera. The current study measured 19 species in these two genera to determine whether variations in 12 categories of major characters are continuous. In addition, a self-organizing map (SOM) and cluster analysis were used together to reveal whether the known species of Fargesia represent discontinuous sampling of Thamnocalamus . The results show that 46 morphological characteristics exhibited high variation at the generic and species levels. In addition, the cluster analysis showed that 32 morphological characteristics of Thamnocalamus and Fargesia were divided between two species and well separated from the outgroup. Additionally, significant differences ( P  &lt; 0.01) were observed in the reproductive structures between these two genera. The unrooted dendrogram, which was based on the SOM neural network, shows the same results as the cluster analysis of morphological characteristics. These data indicate that Fargesia is not a result of discontinuous sampling of Thamnocalamus ; thus, Fargesia should not be treated as a synonym for Thamnocalamus .</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>28646152</pmid><doi>10.1038/s41598-017-04613-9</doi><tpages>12</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2045-2322
ispartof Scientific reports, 2017-06, Vol.7 (1), p.4192-12, Article 4192
issn 2045-2322
2045-2322
language eng
recordid cdi_doaj_primary_oai_doaj_org_article_fc45f23ace6c443983a4bedc94f6bff3
source Publicly Available Content Database; PubMed Central; Free Full-Text Journals in Chemistry; Springer Nature - nature.com Journals - Fully Open Access
subjects 631/181/2480
631/449/2669
Cluster analysis
Humanities and Social Sciences
Morphology
multidisciplinary
Neural networks
Physical characteristics
Sampling
Science
Science (multidisciplinary)
Species
title Differentiating Thamnocalamus Munro from Fargesia Franchet emend. Yi (Bambusoideae, Poaceae): novel evidence from morphological and neural-network analyses
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-08T04%3A55%3A14IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_doaj_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Differentiating%20Thamnocalamus%20Munro%20from%20Fargesia%20Franchet%20emend.%20Yi%20(Bambusoideae,%20Poaceae):%20novel%20evidence%20from%20morphological%20and%20neural-network%20analyses&rft.jtitle=Scientific%20reports&rft.au=Liu,%20Shiliang&rft.date=2017-06-23&rft.volume=7&rft.issue=1&rft.spage=4192&rft.epage=12&rft.pages=4192-12&rft.artnum=4192&rft.issn=2045-2322&rft.eissn=2045-2322&rft_id=info:doi/10.1038/s41598-017-04613-9&rft_dat=%3Cproquest_doaj_%3E1955970962%3C/proquest_doaj_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c540t-758cb4a2c46fd009d1f3ec3041c2b41974d5a5b33ba80e7a522539ff998ef5193%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1955970962&rft_id=info:pmid/28646152&rfr_iscdi=true