A comparison of prokaryote communities inhabiting sponges, bacterial mats, sediment and seawater in Southeast Asian coral reefs

In the present study, we used Illumina sequencing to explore the prokaryote communities of 17 demosponge species and how they compare with bacterial mat, sediment and seawater samples (all sampled from coral reef habitat in Taiwan and Thailand). The studied sponge species formed three clusters. Oper...

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Bibliographic Details
Published in:FEMS microbiology ecology 2019-12, Vol.95 (12), p.1
Main Authors: Cleaiy, D.F.R, Polonia, A.R.M, Huang, Y.M, Putchakarn, S, Gomes, N.C.M, Voogd, N.J. de
Format: Article
Language:English
Subjects:
Coral reefs and islands
DNA sequencing
Genetic aspects
Methods
Nucleotide sequencing
Prokaryotes
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Summary:In the present study, we used Illumina sequencing to explore the prokaryote communities of 17 demosponge species and how they compare with bacterial mat, sediment and seawater samples (all sampled from coral reef habitat in Taiwan and Thailand). The studied sponge species formed three clusters. Operational taxonomic unit (OTU) richness and evenness were by far highest in the sediment and bacterial mat biotopes. There were pronounced differences in OTU richness and evenness among clusters and also considerable variation among certain host species within clusters. Additionally, the relative abundance of some prokaryotic taxa also differed among clusters with Poribacteria, e.g., being recorded in all sponge species, but with very low relative abundances in species of two of the three clusters. This sponge-associated phylum was, however, recorded at relatively high mean abundance in bacterial mat samples, which also housed relatively high abundances of actinobacterial and Chloroflexi members. Our results support high microbial abundance (HMA) status of the species Aaptos Iobata, Hyrtios erectus, Pseudoceratina purpurea and Xestospongia testudinaria and low microbial abundance (LMA) status of the species Acanthella cavernosa, Echinodictyum asperum, Jaspis splendens, Ptilocaulis spiculifer, Stylissa carteri and Suberites diuersicolor. Other species (Agelas cavernosa, Agelas nemoechinata, Acanthostylotella comuta, Paratetilla sp., Hymeniacidon sp. and Haliclona cymaeformis) deviated somewhat from the typical HMA/LMA dichotomy and formed a strongly supported cluster. Keywords: Agelasida; composition; coral reefs, Illumina; Penghu islands
ISSN:0168-6496
DOI:10.1093/femsec/fizl69