StatFingerprints: a friendly graphical interface program for processing and analysis of microbial fingerprint profiles

Molecular fingerprint methods are widely used to compare microbial communities in various habitats. The free program StatFingerprints can import, process, and display fingerprint profiles and perform numerous statistical analyses on them, and also estimate diversity indexes. StatFingerprints works w...

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Bibliographic Details
Published in:Molecular ecology resources 2009-09, Vol.9 (5), p.1359-1363
Main Authors: MICHELLAND, R. J., DEJEAN, S., COMBES, S., FORTUN-LAMOTHE, L., CAUQUIL, L.
Format: Article
Language:English
Subjects:
Computer Science
diversity
ecology
fingerprint
Life Sciences
processing
statistic
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Description
Summary:Molecular fingerprint methods are widely used to compare microbial communities in various habitats. The free program StatFingerprints can import, process, and display fingerprint profiles and perform numerous statistical analyses on them, and also estimate diversity indexes. StatFingerprints works with the free program R, providing an environment for statistical computing and graphics. No programming knowledge is required to use StatFingerprints, thanks to its friendly graphical user interface. StatFingerprints is useful for analysing the effect of a controlled factor on the microbial community and for establishing the relationships between the microbial community and the parameters of its environment. Multivariate analyses include ordination, clustering methods and hypothesis‐driven tests like 50–50 multivariate analysis of variance, analysis of similarity or similarity percentage procedure and the program offers the possibility of plotting ordinations as a three‐dimensional display.
ISSN:1755-098X
1755-0998
DOI:10.1111/j.1755-0998.2009.02609.x