Molecular Phylogeny of the Widely Distributed Marine Protists, Phaeodaria (Rhizaria, Cercozoa)

• Published in: Protist 2015-07, Vol.166 (3), p.363-373
• Main Authors: Nakamura, Yasuhide, Imai, Ichiro, Yamaguchi, Atsushi, Tuji, Akihiro, Not, Fabrice, Suzuki, Noritoshi
• Format: Article
• Language: English
• Subjects: 18S rDNA; Aquatic Organisms - classification; Aquatic Organisms - cytology; Aquatic Organisms - genetics; Cercozoa; Cercozoa - classification; Cercozoa - cytology; Cercozoa - genetics; Environmental Sciences; Life Sciences; Molecular Sequence Data; Phaeodaria; Phylogeny; Rhizaria; RNA, Ribosomal, 18S - genetics; single-cell PCR
• ISSN: 1434-4610; 1618-0941
• DOI: 10.1016/j.protis.2015.05.004

Phaeodarians are a group of widely distributed marine cercozoans. These plankton organisms can exhibit a large biomass in the environment and are supposed to play an important role in marine ecosystems and in material cycles in the ocean. Accurate knowledge of phaeodarian classification is thus necessary to better understand marine biology, however, phylogenetic information on Phaeodaria is limited. The present study analyzed 18S rDNA sequences encompassing all existing phaeodarian orders, to clarify their phylogenetic relationships and improve their taxonomic classification. The monophyly of Phaeodaria was confirmed and strongly supported by phylogenetic analysis with a larger data set than in previous studies. The phaeodarian clade contained 11 subclades which generally did not correspond to the families and orders of the current classification system. Two families (Challengeriidae and Aulosphaeridae) and two orders (Phaeogromida and Phaeocalpida) are possibly polyphyletic or paraphyletic, and consequently the classification needs to be revised at both the family and order levels by integrative taxonomy approaches. Two morphological criteria, 1) the scleracoma type and 2) its surface structure, could be useful markers at the family level.