Molecular polymorphism and genetic relationships in date palm (Phoenix dactylifera L.): The utility of nuclear microsatellite markers

• Published in: Scientia horticulturae 2012-12, Vol.148, p.255-263
• Main Authors: Zehdi, Salwa, Cherif, Emira, Rhouma, Soumaya, Santoni, Sylvain, Hannachi, Amel Salhi, Pintaud, Jean Christophe
• Format: Article
• Language: English
• Subjects: Agronomy. Soil science and plant productions; Biological and medical sciences; Cultivar identification key; Cultivars: description, identification, tests, catalogs; Date palm; Fundamental and applied biological sciences. Psychology; Generalities. Genetics. Plant material; Genetic diversity; Genetic resources, diversity; Genetics and breeding of economic plants; Life Sciences; Microsatellite; Phoenix dactylifera L; Plant material; Taxonomy; Varietal selection. Specialized plant breeding, plant breeding aims
• ISSN: 0304-4238; 1879-1018
• DOI: 10.1016/j.scienta.2012.10.011

► Using SSR markers and a population genetics method, we investigated genetic relationships between Tunisian accessions of date palm. ► We noted similar high levels of genetic diversity among Tunisians geographic groups. ► We compared genetic diversity of Tunisian and Oriental accessions of date palm. ► We noted the difference between Tunisians groups and Oriental group. ► We obtained an identification key that discriminate all studied accessions. Due to the economic importance of the date palm in Tunisia, we attempt to develop microsatellite markers for the genetic characterisation and identification of cultivars. This characterisation will enable us to obtain an extensive understanding of the local genetic diversity and its distribution. Fourteen microsatellite loci of Phoenix dactylifera L. were tested to examine the genetic diversity in the Tunisian date palm germplasm; 74 female and 27 male cultivars were represented. A total of 136 alleles and 311 genotypes were detected based on 14 loci microsatellite. A high level of polymorphism was detected at the DNA level. The 101 date palms from three main oases exhibited a high degree of genetic diversity and were structured independently of their geographical origin and sex. All the local date palm accessions were successfully fingerprinted and easily distinguished based on only five loci. The possibility of using microsatellites in the large-scale molecular labelling of offshoots and in vitro plantlets and in the certification of plant material is discussed.