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A candidate gene study identifies a haplotype of CD2 as novel susceptibility factor for systemic sclerosis
Systemic sclerosis (SSc) is a rare autoimmune disease (AID) with a complex genetic etiology. Evidence for a shared pathogenesis across AIDs is given by the well-known pleiotropism of autoimmune genes. Recently, several unbiased approaches have identified an association between polymorphisms of the C...
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Published in: | Clinical and experimental rheumatology 2016-09, Vol.34 Suppl 100 (5), p.43-48 |
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creator | Koumakis, Eugenie Bouaziz, Matthieu Dieudé, Philippe Cauvet, Anne Ruiz, Barbara Airò, Paolo Cusi, Daniele Matucci-Cerinic, Marco Salvi, Erika Cuomo, Giovanna Hachulla, Eric Diot, Elisabeth Caramaschi, Paola Riccieri, Valeria Avouac, Jerome Allanore, Yannick |
description | Systemic sclerosis (SSc) is a rare autoimmune disease (AID) with a complex genetic etiology. Evidence for a shared pathogenesis across AIDs is given by the well-known pleiotropism of autoimmune genes. Recently, several unbiased approaches have identified an association between polymorphisms of the CD2 gene, and rheumatoid arthritis (RA) susceptibility. The objective of this study was to investigate whether CD2 polymorphisms are associated with SSc.
Two SNPs of CD2, rs624988 and rs798036, were genotyped in a total of 1,786 SSc patients and 2,360 healthy individuals from two European populations (France and Italy). Meta-analyses were performed to assess whether an association exists between CD2 polymorphisms or haplotypes and SSc or its main subtypes.
The combined analyses revealed an association between the rs624988 A allele and SSc susceptibility: padj=0.023, OR=1.14 (95%CI 1.04-1.25). Single marker analysis did not reveal any association between rs798036 and SSc. Haplotype analysis identified that the A-T haplotype, previously described in RA, was associated with higher susceptibility for SSc (padj=0.029, OR=1.14, 95%CI 1.04-1.25) and with the positive anti-centromere antibody sub-group of SSc patients (padj=0.009, OR=1.19 95%CI 1.07-1.32). Genotype-mRNA expression correlations revealed that the CD2 risk haplotype was associated with decreased CD2 mRNA expression in SSc patients.
Our study establishes CD2 as a new susceptibility factor for SSc, in a European Caucasian population, confirming the sharing of autoimmune risk factors by SSc and RA. |
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Two SNPs of CD2, rs624988 and rs798036, were genotyped in a total of 1,786 SSc patients and 2,360 healthy individuals from two European populations (France and Italy). Meta-analyses were performed to assess whether an association exists between CD2 polymorphisms or haplotypes and SSc or its main subtypes.
The combined analyses revealed an association between the rs624988 A allele and SSc susceptibility: padj=0.023, OR=1.14 (95%CI 1.04-1.25). Single marker analysis did not reveal any association between rs798036 and SSc. Haplotype analysis identified that the A-T haplotype, previously described in RA, was associated with higher susceptibility for SSc (padj=0.029, OR=1.14, 95%CI 1.04-1.25) and with the positive anti-centromere antibody sub-group of SSc patients (padj=0.009, OR=1.19 95%CI 1.07-1.32). Genotype-mRNA expression correlations revealed that the CD2 risk haplotype was associated with decreased CD2 mRNA expression in SSc patients.
Our study establishes CD2 as a new susceptibility factor for SSc, in a European Caucasian population, confirming the sharing of autoimmune risk factors by SSc and RA.</description><identifier>ISSN: 0392-856X</identifier><identifier>PMID: 27385538</identifier><language>eng</language><publisher>Italy: Clinical and Experimental Rheumatology Sas</publisher><subject>Adult ; Aged ; Autoimmunity - genetics ; Case-Control Studies ; CD2 Antigens - genetics ; CD2 Antigens - immunology ; European Continental Ancestry Group - genetics ; Female ; France - epidemiology ; Gene Frequency ; Genetic Association Studies ; Genetic Markers ; Genetic Predisposition to Disease ; Haplotypes ; Humans ; Italy - epidemiology ; Life Sciences ; Male ; Middle Aged ; Odds Ratio ; Phenotype ; Polymorphism, Single Nucleotide ; Risk Factors ; Scleroderma, Systemic - diagnosis ; Scleroderma, Systemic - ethnology ; Scleroderma, Systemic - genetics ; Scleroderma, Systemic - immunology</subject><ispartof>Clinical and experimental rheumatology, 2016-09, Vol.34 Suppl 100 (5), p.43-48</ispartof><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0002-2463-218X ; 0000-0003-2984-9334 ; 0000-0001-7432-847X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27385538$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-01606686$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Koumakis, Eugenie</creatorcontrib><creatorcontrib>Bouaziz, Matthieu</creatorcontrib><creatorcontrib>Dieudé, Philippe</creatorcontrib><creatorcontrib>Cauvet, Anne</creatorcontrib><creatorcontrib>Ruiz, Barbara</creatorcontrib><creatorcontrib>Airò, Paolo</creatorcontrib><creatorcontrib>Cusi, Daniele</creatorcontrib><creatorcontrib>Matucci-Cerinic, Marco</creatorcontrib><creatorcontrib>Salvi, Erika</creatorcontrib><creatorcontrib>Cuomo, Giovanna</creatorcontrib><creatorcontrib>Hachulla, Eric</creatorcontrib><creatorcontrib>Diot, Elisabeth</creatorcontrib><creatorcontrib>Caramaschi, Paola</creatorcontrib><creatorcontrib>Riccieri, Valeria</creatorcontrib><creatorcontrib>Avouac, Jerome</creatorcontrib><creatorcontrib>Allanore, Yannick</creatorcontrib><title>A candidate gene study identifies a haplotype of CD2 as novel susceptibility factor for systemic sclerosis</title><title>Clinical and experimental rheumatology</title><addtitle>Clin Exp Rheumatol</addtitle><description>Systemic sclerosis (SSc) is a rare autoimmune disease (AID) with a complex genetic etiology. Evidence for a shared pathogenesis across AIDs is given by the well-known pleiotropism of autoimmune genes. Recently, several unbiased approaches have identified an association between polymorphisms of the CD2 gene, and rheumatoid arthritis (RA) susceptibility. The objective of this study was to investigate whether CD2 polymorphisms are associated with SSc.
Two SNPs of CD2, rs624988 and rs798036, were genotyped in a total of 1,786 SSc patients and 2,360 healthy individuals from two European populations (France and Italy). Meta-analyses were performed to assess whether an association exists between CD2 polymorphisms or haplotypes and SSc or its main subtypes.
The combined analyses revealed an association between the rs624988 A allele and SSc susceptibility: padj=0.023, OR=1.14 (95%CI 1.04-1.25). Single marker analysis did not reveal any association between rs798036 and SSc. Haplotype analysis identified that the A-T haplotype, previously described in RA, was associated with higher susceptibility for SSc (padj=0.029, OR=1.14, 95%CI 1.04-1.25) and with the positive anti-centromere antibody sub-group of SSc patients (padj=0.009, OR=1.19 95%CI 1.07-1.32). Genotype-mRNA expression correlations revealed that the CD2 risk haplotype was associated with decreased CD2 mRNA expression in SSc patients.
Our study establishes CD2 as a new susceptibility factor for SSc, in a European Caucasian population, confirming the sharing of autoimmune risk factors by SSc and RA.</description><subject>Adult</subject><subject>Aged</subject><subject>Autoimmunity - genetics</subject><subject>Case-Control Studies</subject><subject>CD2 Antigens - genetics</subject><subject>CD2 Antigens - immunology</subject><subject>European Continental Ancestry Group - genetics</subject><subject>Female</subject><subject>France - epidemiology</subject><subject>Gene Frequency</subject><subject>Genetic Association Studies</subject><subject>Genetic Markers</subject><subject>Genetic Predisposition to Disease</subject><subject>Haplotypes</subject><subject>Humans</subject><subject>Italy - epidemiology</subject><subject>Life Sciences</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Odds Ratio</subject><subject>Phenotype</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Risk Factors</subject><subject>Scleroderma, Systemic - diagnosis</subject><subject>Scleroderma, Systemic - ethnology</subject><subject>Scleroderma, Systemic - genetics</subject><subject>Scleroderma, Systemic - immunology</subject><issn>0392-856X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><recordid>eNo90E1Lw0AQBuAcFFurf0H2qIfCfjSb5FjqR4WCFwVvYTY7sVs22ZjZFPLvjbR6mBkYHl6YuUjmXBVymaf6c5ZcEx04lzrV2VUyk5nK01Tl8-SwZhW01lmIyL6wRUZxsCNzFtvoaofEgO2h8yGOHbJQs82jZECsDUf0jAaqsIvOOO_iyGqoYuhZPRWNFLFxFaPKYx_I0U1yWYMnvD3PRfLx_PS-2S53by-vm_VuuZerNC5B2DTLeJVqrqyqV6YwGTeFkijQFlbqQis0Ruk8E1LUU7M5SFgZznWuLahF8nDK3YMvu9410I9lAFdu17vyd8eF5nqyRzHZ-5Pt-vA9IMWycdNF3kOLYaBS5FJnQkj9S-_OdDAN2v_kv1-qH1m4bvI</recordid><startdate>20160901</startdate><enddate>20160901</enddate><creator>Koumakis, Eugenie</creator><creator>Bouaziz, Matthieu</creator><creator>Dieudé, Philippe</creator><creator>Cauvet, Anne</creator><creator>Ruiz, Barbara</creator><creator>Airò, Paolo</creator><creator>Cusi, Daniele</creator><creator>Matucci-Cerinic, Marco</creator><creator>Salvi, Erika</creator><creator>Cuomo, Giovanna</creator><creator>Hachulla, Eric</creator><creator>Diot, Elisabeth</creator><creator>Caramaschi, Paola</creator><creator>Riccieri, Valeria</creator><creator>Avouac, Jerome</creator><creator>Allanore, Yannick</creator><general>Clinical and Experimental Rheumatology Sas</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0002-2463-218X</orcidid><orcidid>https://orcid.org/0000-0003-2984-9334</orcidid><orcidid>https://orcid.org/0000-0001-7432-847X</orcidid></search><sort><creationdate>20160901</creationdate><title>A candidate gene study identifies a haplotype of CD2 as novel susceptibility factor for systemic sclerosis</title><author>Koumakis, Eugenie ; Bouaziz, Matthieu ; Dieudé, Philippe ; Cauvet, Anne ; Ruiz, Barbara ; Airò, Paolo ; Cusi, Daniele ; Matucci-Cerinic, Marco ; Salvi, Erika ; Cuomo, Giovanna ; Hachulla, Eric ; Diot, Elisabeth ; Caramaschi, Paola ; Riccieri, Valeria ; Avouac, Jerome ; Allanore, Yannick</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-h245t-a1d5770c5603d3f4b9b70b932e1ed9d26963ebb3687121f712d8a2a4b00686da3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Autoimmunity - genetics</topic><topic>Case-Control Studies</topic><topic>CD2 Antigens - genetics</topic><topic>CD2 Antigens - immunology</topic><topic>European Continental Ancestry Group - genetics</topic><topic>Female</topic><topic>France - epidemiology</topic><topic>Gene Frequency</topic><topic>Genetic Association Studies</topic><topic>Genetic Markers</topic><topic>Genetic Predisposition to Disease</topic><topic>Haplotypes</topic><topic>Humans</topic><topic>Italy - epidemiology</topic><topic>Life Sciences</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Odds Ratio</topic><topic>Phenotype</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Risk Factors</topic><topic>Scleroderma, Systemic - diagnosis</topic><topic>Scleroderma, Systemic - ethnology</topic><topic>Scleroderma, Systemic - genetics</topic><topic>Scleroderma, Systemic - immunology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Koumakis, Eugenie</creatorcontrib><creatorcontrib>Bouaziz, Matthieu</creatorcontrib><creatorcontrib>Dieudé, Philippe</creatorcontrib><creatorcontrib>Cauvet, Anne</creatorcontrib><creatorcontrib>Ruiz, Barbara</creatorcontrib><creatorcontrib>Airò, Paolo</creatorcontrib><creatorcontrib>Cusi, Daniele</creatorcontrib><creatorcontrib>Matucci-Cerinic, Marco</creatorcontrib><creatorcontrib>Salvi, Erika</creatorcontrib><creatorcontrib>Cuomo, Giovanna</creatorcontrib><creatorcontrib>Hachulla, Eric</creatorcontrib><creatorcontrib>Diot, Elisabeth</creatorcontrib><creatorcontrib>Caramaschi, Paola</creatorcontrib><creatorcontrib>Riccieri, Valeria</creatorcontrib><creatorcontrib>Avouac, Jerome</creatorcontrib><creatorcontrib>Allanore, Yannick</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Clinical and experimental rheumatology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Koumakis, Eugenie</au><au>Bouaziz, Matthieu</au><au>Dieudé, Philippe</au><au>Cauvet, Anne</au><au>Ruiz, Barbara</au><au>Airò, Paolo</au><au>Cusi, Daniele</au><au>Matucci-Cerinic, Marco</au><au>Salvi, Erika</au><au>Cuomo, Giovanna</au><au>Hachulla, Eric</au><au>Diot, Elisabeth</au><au>Caramaschi, Paola</au><au>Riccieri, Valeria</au><au>Avouac, Jerome</au><au>Allanore, Yannick</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A candidate gene study identifies a haplotype of CD2 as novel susceptibility factor for systemic sclerosis</atitle><jtitle>Clinical and experimental rheumatology</jtitle><addtitle>Clin Exp Rheumatol</addtitle><date>2016-09-01</date><risdate>2016</risdate><volume>34 Suppl 100</volume><issue>5</issue><spage>43</spage><epage>48</epage><pages>43-48</pages><issn>0392-856X</issn><abstract>Systemic sclerosis (SSc) is a rare autoimmune disease (AID) with a complex genetic etiology. Evidence for a shared pathogenesis across AIDs is given by the well-known pleiotropism of autoimmune genes. Recently, several unbiased approaches have identified an association between polymorphisms of the CD2 gene, and rheumatoid arthritis (RA) susceptibility. The objective of this study was to investigate whether CD2 polymorphisms are associated with SSc.
Two SNPs of CD2, rs624988 and rs798036, were genotyped in a total of 1,786 SSc patients and 2,360 healthy individuals from two European populations (France and Italy). Meta-analyses were performed to assess whether an association exists between CD2 polymorphisms or haplotypes and SSc or its main subtypes.
The combined analyses revealed an association between the rs624988 A allele and SSc susceptibility: padj=0.023, OR=1.14 (95%CI 1.04-1.25). Single marker analysis did not reveal any association between rs798036 and SSc. Haplotype analysis identified that the A-T haplotype, previously described in RA, was associated with higher susceptibility for SSc (padj=0.029, OR=1.14, 95%CI 1.04-1.25) and with the positive anti-centromere antibody sub-group of SSc patients (padj=0.009, OR=1.19 95%CI 1.07-1.32). Genotype-mRNA expression correlations revealed that the CD2 risk haplotype was associated with decreased CD2 mRNA expression in SSc patients.
Our study establishes CD2 as a new susceptibility factor for SSc, in a European Caucasian population, confirming the sharing of autoimmune risk factors by SSc and RA.</abstract><cop>Italy</cop><pub>Clinical and Experimental Rheumatology Sas</pub><pmid>27385538</pmid><tpages>6</tpages><orcidid>https://orcid.org/0000-0002-2463-218X</orcidid><orcidid>https://orcid.org/0000-0003-2984-9334</orcidid><orcidid>https://orcid.org/0000-0001-7432-847X</orcidid></addata></record> |
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subjects | Adult Aged Autoimmunity - genetics Case-Control Studies CD2 Antigens - genetics CD2 Antigens - immunology European Continental Ancestry Group - genetics Female France - epidemiology Gene Frequency Genetic Association Studies Genetic Markers Genetic Predisposition to Disease Haplotypes Humans Italy - epidemiology Life Sciences Male Middle Aged Odds Ratio Phenotype Polymorphism, Single Nucleotide Risk Factors Scleroderma, Systemic - diagnosis Scleroderma, Systemic - ethnology Scleroderma, Systemic - genetics Scleroderma, Systemic - immunology |
title | A candidate gene study identifies a haplotype of CD2 as novel susceptibility factor for systemic sclerosis |
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