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The flexible stem hypothesis: evidence from genetic data
Phenotypic plasticity, the ability of a given genotype to produce different phenotypes in response to distinct environmental conditions, is widely observed in the wild. It is believed to facilitate evolution and, under the “flexible stem hypothesis”, it is thought that an ancestral plastic species c...
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Published in: | Development genes and evolution 2017-09, Vol.227 (5), p.297-307 |
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description | Phenotypic plasticity, the ability of a given genotype to produce different phenotypes in response to distinct environmental conditions, is widely observed in the wild. It is believed to facilitate evolution and, under the “flexible stem hypothesis”, it is thought that an ancestral plastic species can be at the origin of sister lineages with divergent phenotypes fixed by genetic assimilation of alternative morphs. We review here the genetic mechanisms underlying such phenomenon. We show several examples in which the same gene shows transcriptional plasticity in response to environmental factors and divergence of expression within or between species. Thus, the same gene is involved both in the plasticity of a trait and in the evolution of that trait. In a few cases, it can be traced down to
cis
-regulatory variation in this gene and, in one case, in the very same regulatory sequence whose activity is modulated by the environment. These data are compatible with the “flexible stem hypothesis” and also suggest that the evolution of the plasticity of a trait and the evolution of the trait are not completely uncoupled as they often involve the same
locus
. Furthermore, the “flexible stem hypothesis” implies that it is possible to canalize initially plastic phenotypes. Several studies have shown that it was possible through modification of chromatin regulation or hormonal signalling/response. Further studies of phenotypic plasticity in an evolutionary framework are needed to see how much the findings described in this review can be generalized. |
doi_str_mv | 10.1007/s00427-017-0589-0 |
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cis
-regulatory variation in this gene and, in one case, in the very same regulatory sequence whose activity is modulated by the environment. These data are compatible with the “flexible stem hypothesis” and also suggest that the evolution of the plasticity of a trait and the evolution of the trait are not completely uncoupled as they often involve the same
locus
. Furthermore, the “flexible stem hypothesis” implies that it is possible to canalize initially plastic phenotypes. Several studies have shown that it was possible through modification of chromatin regulation or hormonal signalling/response. Further studies of phenotypic plasticity in an evolutionary framework are needed to see how much the findings described in this review can be generalized.</description><identifier>ISSN: 0949-944X</identifier><identifier>EISSN: 1432-041X</identifier><identifier>DOI: 10.1007/s00427-017-0589-0</identifier><identifier>PMID: 28780641</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Adaptation, Physiological ; Animal Genetics and Genomics ; Animals ; Biological Evolution ; Biomedical and Life Sciences ; Cell Biology ; Chromatin ; Chromosomal Proteins, Non-Histone - genetics ; Development Biology ; Developmental Biology ; Environmental conditions ; Environmental factors ; Evolution ; Evolutionary Biology ; Gene Expression Regulation ; Gene-Environment Interaction ; Genetic Variation ; Humans ; Hypotheses ; Life Sciences ; Phenotype ; Phenotypic plasticity ; Plant Genetics and Genomics ; Regulatory sequences ; Review ; Selection, Genetic ; Transcription ; Zoology</subject><ispartof>Development genes and evolution, 2017-09, Vol.227 (5), p.297-307</ispartof><rights>Springer-Verlag GmbH Germany 2017</rights><rights>Development Genes and Evolution is a copyright of Springer, 2017.</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c449t-c22bad005cbfb301b19e5ca5d98e9851c1e472369b99b2ee700f1814006a81303</citedby><cites>FETCH-LOGICAL-c449t-c22bad005cbfb301b19e5ca5d98e9851c1e472369b99b2ee700f1814006a81303</cites><orcidid>0000-0002-1579-0266 ; 0000-0001-9428-5243</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28780641$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-01628015$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Gibert, Jean-Michel</creatorcontrib><title>The flexible stem hypothesis: evidence from genetic data</title><title>Development genes and evolution</title><addtitle>Dev Genes Evol</addtitle><addtitle>Dev Genes Evol</addtitle><description>Phenotypic plasticity, the ability of a given genotype to produce different phenotypes in response to distinct environmental conditions, is widely observed in the wild. It is believed to facilitate evolution and, under the “flexible stem hypothesis”, it is thought that an ancestral plastic species can be at the origin of sister lineages with divergent phenotypes fixed by genetic assimilation of alternative morphs. We review here the genetic mechanisms underlying such phenomenon. We show several examples in which the same gene shows transcriptional plasticity in response to environmental factors and divergence of expression within or between species. Thus, the same gene is involved both in the plasticity of a trait and in the evolution of that trait. In a few cases, it can be traced down to
cis
-regulatory variation in this gene and, in one case, in the very same regulatory sequence whose activity is modulated by the environment. These data are compatible with the “flexible stem hypothesis” and also suggest that the evolution of the plasticity of a trait and the evolution of the trait are not completely uncoupled as they often involve the same
locus
. Furthermore, the “flexible stem hypothesis” implies that it is possible to canalize initially plastic phenotypes. Several studies have shown that it was possible through modification of chromatin regulation or hormonal signalling/response. Further studies of phenotypic plasticity in an evolutionary framework are needed to see how much the findings described in this review can be generalized.</description><subject>Adaptation, Physiological</subject><subject>Animal Genetics and Genomics</subject><subject>Animals</subject><subject>Biological Evolution</subject><subject>Biomedical and Life Sciences</subject><subject>Cell Biology</subject><subject>Chromatin</subject><subject>Chromosomal Proteins, Non-Histone - genetics</subject><subject>Development Biology</subject><subject>Developmental Biology</subject><subject>Environmental conditions</subject><subject>Environmental factors</subject><subject>Evolution</subject><subject>Evolutionary Biology</subject><subject>Gene Expression Regulation</subject><subject>Gene-Environment Interaction</subject><subject>Genetic Variation</subject><subject>Humans</subject><subject>Hypotheses</subject><subject>Life Sciences</subject><subject>Phenotype</subject><subject>Phenotypic plasticity</subject><subject>Plant Genetics and Genomics</subject><subject>Regulatory sequences</subject><subject>Review</subject><subject>Selection, Genetic</subject><subject>Transcription</subject><subject>Zoology</subject><issn>0949-944X</issn><issn>1432-041X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNp1kU1LxDAQhoMoun78AC9S8KKH6kyatom3ZfELFryssLeQplO30o-16Yr7783SdRHBwzCQPHnnzbyMnSPcIEB66wAET0NAX7FUIeyxEYqIhyBwvs9GoIQKlRDzI3bs3DsAchXFh-yIy1RCInDE5GxBQVHRV5lVFLie6mCxXrb9glzp7gL6LHNqrEe6tg7eqKG-tEFuenPKDgpTOTrb9hP2-nA_mzyF05fH58l4GlohVB9azjOTA8Q2K7IIMENFsTVxriQpGaNFEimPEpUplXGiFKBAiQIgMRIjiE7Y9aC7MJVedmVturVuTamfxlO9OQNMuASMP9GzVwO77NqPFble16WzVFWmoXblNCqeqFQKkXr08g_63q66xv_EU5GMlEhE7CkcKNu1znVU7Bwg6E0EeojAm_DlI9Abwxdb5VVWU7578bNzD_ABcP6qeaPu1-h_Vb8BHFCOAQ</recordid><startdate>20170901</startdate><enddate>20170901</enddate><creator>Gibert, Jean-Michel</creator><general>Springer Berlin Heidelberg</general><general>Springer Nature B.V</general><general>Springer Verlag</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QP</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><orcidid>https://orcid.org/0000-0002-1579-0266</orcidid><orcidid>https://orcid.org/0000-0001-9428-5243</orcidid></search><sort><creationdate>20170901</creationdate><title>The flexible stem hypothesis: evidence from genetic data</title><author>Gibert, Jean-Michel</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c449t-c22bad005cbfb301b19e5ca5d98e9851c1e472369b99b2ee700f1814006a81303</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Adaptation, Physiological</topic><topic>Animal Genetics and Genomics</topic><topic>Animals</topic><topic>Biological Evolution</topic><topic>Biomedical and Life Sciences</topic><topic>Cell Biology</topic><topic>Chromatin</topic><topic>Chromosomal Proteins, Non-Histone - genetics</topic><topic>Development Biology</topic><topic>Developmental Biology</topic><topic>Environmental conditions</topic><topic>Environmental factors</topic><topic>Evolution</topic><topic>Evolutionary Biology</topic><topic>Gene Expression Regulation</topic><topic>Gene-Environment Interaction</topic><topic>Genetic Variation</topic><topic>Humans</topic><topic>Hypotheses</topic><topic>Life Sciences</topic><topic>Phenotype</topic><topic>Phenotypic plasticity</topic><topic>Plant Genetics and Genomics</topic><topic>Regulatory sequences</topic><topic>Review</topic><topic>Selection, Genetic</topic><topic>Transcription</topic><topic>Zoology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gibert, Jean-Michel</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><jtitle>Development genes and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Gibert, Jean-Michel</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The flexible stem hypothesis: evidence from genetic data</atitle><jtitle>Development genes and evolution</jtitle><stitle>Dev Genes Evol</stitle><addtitle>Dev Genes Evol</addtitle><date>2017-09-01</date><risdate>2017</risdate><volume>227</volume><issue>5</issue><spage>297</spage><epage>307</epage><pages>297-307</pages><issn>0949-944X</issn><eissn>1432-041X</eissn><abstract>Phenotypic plasticity, the ability of a given genotype to produce different phenotypes in response to distinct environmental conditions, is widely observed in the wild. It is believed to facilitate evolution and, under the “flexible stem hypothesis”, it is thought that an ancestral plastic species can be at the origin of sister lineages with divergent phenotypes fixed by genetic assimilation of alternative morphs. We review here the genetic mechanisms underlying such phenomenon. We show several examples in which the same gene shows transcriptional plasticity in response to environmental factors and divergence of expression within or between species. Thus, the same gene is involved both in the plasticity of a trait and in the evolution of that trait. In a few cases, it can be traced down to
cis
-regulatory variation in this gene and, in one case, in the very same regulatory sequence whose activity is modulated by the environment. These data are compatible with the “flexible stem hypothesis” and also suggest that the evolution of the plasticity of a trait and the evolution of the trait are not completely uncoupled as they often involve the same
locus
. Furthermore, the “flexible stem hypothesis” implies that it is possible to canalize initially plastic phenotypes. Several studies have shown that it was possible through modification of chromatin regulation or hormonal signalling/response. Further studies of phenotypic plasticity in an evolutionary framework are needed to see how much the findings described in this review can be generalized.</abstract><cop>Berlin/Heidelberg</cop><pub>Springer Berlin Heidelberg</pub><pmid>28780641</pmid><doi>10.1007/s00427-017-0589-0</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0002-1579-0266</orcidid><orcidid>https://orcid.org/0000-0001-9428-5243</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adaptation, Physiological Animal Genetics and Genomics Animals Biological Evolution Biomedical and Life Sciences Cell Biology Chromatin Chromosomal Proteins, Non-Histone - genetics Development Biology Developmental Biology Environmental conditions Environmental factors Evolution Evolutionary Biology Gene Expression Regulation Gene-Environment Interaction Genetic Variation Humans Hypotheses Life Sciences Phenotype Phenotypic plasticity Plant Genetics and Genomics Regulatory sequences Review Selection, Genetic Transcription Zoology |
title | The flexible stem hypothesis: evidence from genetic data |
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