Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia

Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber tracking purposes in the Neotropical timber species Jacaranda copaia . We used...

Full description

Saved in:
Bibliographic Details
Published in:Conservation genetics resources 2019-09, Vol.11 (3), p.341-343
Main Authors: Sebbenn, Alexandre M., Blanc-Jolivet, Celine, Mader, Malte, Meyer-Sand, Barbara R. V., Paredes-Villanueva, Kathelyn, Honorio Coronado, Eurídice N., García-Dávila, Carmen, Tysklind, Niklas, Troispoux, Valerie, Delcamp, Adline, Degen, Bernd
Format: Article
Language:English
Subjects:
Animal Genetics and Genomics
Biodiversity
Biomedical and Life Sciences
Chloroplasts
Conservation Biology/Ecology
DNA sequencing
Ecology
Evolutionary Biology
Gene polymorphism
Genomes
Jacaranda
Life Sciences
Mitochondria
Plant Genetics and Genomics
Population genetics
Single-nucleotide polymorphism
Technical Note
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber tracking purposes in the Neotropical timber species Jacaranda copaia . We used 407 nuclear SNPs, 29 chloroplast, and 31 mitochondrial loci to genotype 92 individuals from Brazil, Bolivia, French Guiana, and Peru. Based on high amplification rates and genetic differentiation among populations, 113 nuclear SNPs, 11 chloroplast, and 4 mitochondrial loci were selected, and their use validated for genetic tracking of timber origin.
ISSN:1877-7252
1877-7260
DOI:10.1007/s12686-019-01097-9