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FragSAD: A database of diversity and species abundance distributions from habitat fragments
Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or...
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Published in: | Ecology (Durham) 2019-12, Vol.100 (12), p.1-1 |
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creator | Chase, Jonathan M. Liebergesell, Mario Sagouis, Alban May, Felix Blowes, Shane A. Berg, Åke Bernard, Enrico Brosi, Berry J. Cadotte, Marc W. Cayuela, Luis Chiarello, Adriano G. Cosson, Jean-Francois Cresswell, Will Dami, Filibus Danjuma Dauber, Jens Dickman, Chris R. Didham, Raphael K. Edwards, David P. Farneda, Fábio Z. Gavish, Yoni Gonçalves-Souza, Thiago Guadagnin, Demetrio Luis Henry, Mickaël López-Baucells, Adrià Kappes, Heike Nally, Ralph Mac Manu, Shiiwua Martensen, Alexandre Camargo Mccollin, Duncan Meyer, Christoph F. J. Neckel-Oliveira, Selvino Nogueira, André Pons, Jean-Marc Raheem, Dinarzarde C. Ramos, Flavio Nunes Rocha, Ricardo Sam, Katerina Slade, Eleanor Stireman, John O. Struebig, Matthew J. Vasconcelos, Heraldo Ziv, Yaron |
description | Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or consensus has been achieved, primarily because of non‐standardized sampling methodology and analyses of notoriously scale‐dependent response variables (i.e., species richness). To be able to compare and contrast the results of habitat fragmentation on species’ assemblages, it is necessary to have the underlying data on species abundances and sampling intensity, so that standardization can be achieved. To accomplish this, we systematically searched the literature for studies where abundances of species in assemblages (of any taxa) were sampled from many habitat patches that varied in size. From these, we extracted data from several studies, and contacted authors of studies where appropriate data were collected but not published, giving us 117 studies that compared species assemblages among habitat fragments that varied in area. Less than one‐half (41) of studies came from tropical forests of Central and South America, but there were many studies from temperate forests and grasslands from all continents except Antarctica. Fifty‐four of the studies were on invertebrates (mostly insects), but there were several studies on plants (15), birds (16), mammals (19), and reptiles and amphibians (13). We also collected qualitative information on the length of time since fragmentation. With data on total and relative abundances (and identities) of species, sampling effort, and affiliated meta‐data about the study sites, these data can be used to more definitively test hypotheses about the role of habitat fragmentation in altering patterns of biodiversity. There are no copyright restrictions. Please cite this data paper and the associated Dryad data set if the data are used in publications. |
doi_str_mv | 10.1002/ecy.2861 |
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J. ; Neckel-Oliveira, Selvino ; Nogueira, André ; Pons, Jean-Marc ; Raheem, Dinarzarde C. ; Ramos, Flavio Nunes ; Rocha, Ricardo ; Sam, Katerina ; Slade, Eleanor ; Stireman, John O. ; Struebig, Matthew J. ; Vasconcelos, Heraldo ; Ziv, Yaron</creator><creatorcontrib>Chase, Jonathan M. ; Liebergesell, Mario ; Sagouis, Alban ; May, Felix ; Blowes, Shane A. ; Berg, Åke ; Bernard, Enrico ; Brosi, Berry J. ; Cadotte, Marc W. ; Cayuela, Luis ; Chiarello, Adriano G. ; Cosson, Jean-Francois ; Cresswell, Will ; Dami, Filibus Danjuma ; Dauber, Jens ; Dickman, Chris R. ; Didham, Raphael K. ; Edwards, David P. ; Farneda, Fábio Z. ; Gavish, Yoni ; Gonçalves-Souza, Thiago ; Guadagnin, Demetrio Luis ; Henry, Mickaël ; López-Baucells, Adrià ; Kappes, Heike ; Nally, Ralph Mac ; Manu, Shiiwua ; Martensen, Alexandre Camargo ; Mccollin, Duncan ; Meyer, Christoph F. J. ; Neckel-Oliveira, Selvino ; Nogueira, André ; Pons, Jean-Marc ; Raheem, Dinarzarde C. ; Ramos, Flavio Nunes ; Rocha, Ricardo ; Sam, Katerina ; Slade, Eleanor ; Stireman, John O. ; Struebig, Matthew J. ; Vasconcelos, Heraldo ; Ziv, Yaron</creatorcontrib><description>Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or consensus has been achieved, primarily because of non‐standardized sampling methodology and analyses of notoriously scale‐dependent response variables (i.e., species richness). To be able to compare and contrast the results of habitat fragmentation on species’ assemblages, it is necessary to have the underlying data on species abundances and sampling intensity, so that standardization can be achieved. To accomplish this, we systematically searched the literature for studies where abundances of species in assemblages (of any taxa) were sampled from many habitat patches that varied in size. From these, we extracted data from several studies, and contacted authors of studies where appropriate data were collected but not published, giving us 117 studies that compared species assemblages among habitat fragments that varied in area. Less than one‐half (41) of studies came from tropical forests of Central and South America, but there were many studies from temperate forests and grasslands from all continents except Antarctica. Fifty‐four of the studies were on invertebrates (mostly insects), but there were several studies on plants (15), birds (16), mammals (19), and reptiles and amphibians (13). We also collected qualitative information on the length of time since fragmentation. With data on total and relative abundances (and identities) of species, sampling effort, and affiliated meta‐data about the study sites, these data can be used to more definitively test hypotheses about the role of habitat fragmentation in altering patterns of biodiversity. There are no copyright restrictions. Please cite this data paper and the associated Dryad data set if the data are used in publications.</description><identifier>ISSN: 0012-9658</identifier><identifier>EISSN: 1939-9170</identifier><identifier>DOI: 10.1002/ecy.2861</identifier><identifier>PMID: 31380568</identifier><language>eng</language><publisher>United States: John Wiley and Sons, Inc</publisher><subject>Amphibians ; Anthropogenic factors ; Biodiversity ; Birds ; Data Papers ; Datasets ; Dependent variables ; disturbance ; Environmental degradation ; Environmental Sciences ; Fragmentation ; Fragments ; Grasslands ; Habitat fragmentation ; habitat loss ; Habitats ; Insects ; Invertebrates ; Life Sciences ; Qualitative analysis ; Reptiles ; Sampling ; species abundance distribution ; Species diversity ; Species richness ; species–area relationship ; Standardization ; Temperate forests ; Tropical forests</subject><ispartof>Ecology (Durham), 2019-12, Vol.100 (12), p.1-1</ispartof><rights>2019 The Authors © 2019 The Ecological Society of America</rights><rights>2019 The Authors. © 2019 The Ecological Society of America</rights><rights>This article is protected by copyright. All rights reserved.</rights><rights>2019. This article is published under http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). 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Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or consensus has been achieved, primarily because of non‐standardized sampling methodology and analyses of notoriously scale‐dependent response variables (i.e., species richness). To be able to compare and contrast the results of habitat fragmentation on species’ assemblages, it is necessary to have the underlying data on species abundances and sampling intensity, so that standardization can be achieved. To accomplish this, we systematically searched the literature for studies where abundances of species in assemblages (of any taxa) were sampled from many habitat patches that varied in size. From these, we extracted data from several studies, and contacted authors of studies where appropriate data were collected but not published, giving us 117 studies that compared species assemblages among habitat fragments that varied in area. Less than one‐half (41) of studies came from tropical forests of Central and South America, but there were many studies from temperate forests and grasslands from all continents except Antarctica. Fifty‐four of the studies were on invertebrates (mostly insects), but there were several studies on plants (15), birds (16), mammals (19), and reptiles and amphibians (13). We also collected qualitative information on the length of time since fragmentation. With data on total and relative abundances (and identities) of species, sampling effort, and affiliated meta‐data about the study sites, these data can be used to more definitively test hypotheses about the role of habitat fragmentation in altering patterns of biodiversity. There are no copyright restrictions. Please cite this data paper and the associated Dryad data set if the data are used in publications.</description><subject>Amphibians</subject><subject>Anthropogenic factors</subject><subject>Biodiversity</subject><subject>Birds</subject><subject>Data Papers</subject><subject>Datasets</subject><subject>Dependent variables</subject><subject>disturbance</subject><subject>Environmental degradation</subject><subject>Environmental Sciences</subject><subject>Fragmentation</subject><subject>Fragments</subject><subject>Grasslands</subject><subject>Habitat fragmentation</subject><subject>habitat loss</subject><subject>Habitats</subject><subject>Insects</subject><subject>Invertebrates</subject><subject>Life Sciences</subject><subject>Qualitative analysis</subject><subject>Reptiles</subject><subject>Sampling</subject><subject>species abundance distribution</subject><subject>Species diversity</subject><subject>Species richness</subject><subject>species–area relationship</subject><subject>Standardization</subject><subject>Temperate forests</subject><subject>Tropical forests</subject><issn>0012-9658</issn><issn>1939-9170</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><recordid>eNo90E1PAjEQBuDGaGBFE_-AXjx5WJzp5_S44UNMSDyoB09NgSKQxcVd0PDv7WZxe-gk7ZPJzMvYDUIfAfhjmB_7nDSesQStsKlFA-csAUCeWq2oyy6ragPxoKQO6woUBEpTwjrj0n--ZsMrdrH0eRWuT7XH3sejt8Eknb48PQ-yaboSVmDq1VJ6AktGLSwHQq1BoZEhzOsLjLKGvAhIwIkUzr0HbYxQUkgMMxI99tD0Xfnc7cr11pdHV_i1m2RTV78B11zG8X4w2vvG7sri-xCqvdsUh_Irjue44MjRGC2jujupw2wbFm3T_x0jSBvwu87Dsf1HcHV2Lmbn6uzcaPBR1-hvG7-p9kXZeq5JCW2k-APRzGNe</recordid><startdate>201912</startdate><enddate>201912</enddate><creator>Chase, Jonathan M.</creator><creator>Liebergesell, Mario</creator><creator>Sagouis, Alban</creator><creator>May, Felix</creator><creator>Blowes, Shane A.</creator><creator>Berg, Åke</creator><creator>Bernard, Enrico</creator><creator>Brosi, Berry J.</creator><creator>Cadotte, Marc W.</creator><creator>Cayuela, Luis</creator><creator>Chiarello, Adriano G.</creator><creator>Cosson, Jean-Francois</creator><creator>Cresswell, Will</creator><creator>Dami, Filibus Danjuma</creator><creator>Dauber, Jens</creator><creator>Dickman, Chris R.</creator><creator>Didham, Raphael K.</creator><creator>Edwards, David P.</creator><creator>Farneda, Fábio Z.</creator><creator>Gavish, Yoni</creator><creator>Gonçalves-Souza, Thiago</creator><creator>Guadagnin, Demetrio Luis</creator><creator>Henry, Mickaël</creator><creator>López-Baucells, Adrià</creator><creator>Kappes, Heike</creator><creator>Nally, Ralph Mac</creator><creator>Manu, Shiiwua</creator><creator>Martensen, Alexandre Camargo</creator><creator>Mccollin, Duncan</creator><creator>Meyer, Christoph F. 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J.</creatorcontrib><creatorcontrib>Neckel-Oliveira, Selvino</creatorcontrib><creatorcontrib>Nogueira, André</creatorcontrib><creatorcontrib>Pons, Jean-Marc</creatorcontrib><creatorcontrib>Raheem, Dinarzarde C.</creatorcontrib><creatorcontrib>Ramos, Flavio Nunes</creatorcontrib><creatorcontrib>Rocha, Ricardo</creatorcontrib><creatorcontrib>Sam, Katerina</creatorcontrib><creatorcontrib>Slade, Eleanor</creatorcontrib><creatorcontrib>Stireman, John O.</creatorcontrib><creatorcontrib>Struebig, Matthew J.</creatorcontrib><creatorcontrib>Vasconcelos, Heraldo</creatorcontrib><creatorcontrib>Ziv, Yaron</creatorcontrib><collection>PubMed</collection><collection>Animal Behavior Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Environment Abstracts</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>Environment Abstracts</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Ecology (Durham)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chase, Jonathan M.</au><au>Liebergesell, Mario</au><au>Sagouis, Alban</au><au>May, Felix</au><au>Blowes, Shane A.</au><au>Berg, Åke</au><au>Bernard, Enrico</au><au>Brosi, Berry J.</au><au>Cadotte, Marc W.</au><au>Cayuela, Luis</au><au>Chiarello, Adriano G.</au><au>Cosson, Jean-Francois</au><au>Cresswell, Will</au><au>Dami, Filibus Danjuma</au><au>Dauber, Jens</au><au>Dickman, Chris R.</au><au>Didham, Raphael K.</au><au>Edwards, David P.</au><au>Farneda, Fábio Z.</au><au>Gavish, Yoni</au><au>Gonçalves-Souza, Thiago</au><au>Guadagnin, Demetrio Luis</au><au>Henry, Mickaël</au><au>López-Baucells, Adrià</au><au>Kappes, Heike</au><au>Nally, Ralph Mac</au><au>Manu, Shiiwua</au><au>Martensen, Alexandre Camargo</au><au>Mccollin, Duncan</au><au>Meyer, Christoph F. J.</au><au>Neckel-Oliveira, Selvino</au><au>Nogueira, André</au><au>Pons, Jean-Marc</au><au>Raheem, Dinarzarde C.</au><au>Ramos, Flavio Nunes</au><au>Rocha, Ricardo</au><au>Sam, Katerina</au><au>Slade, Eleanor</au><au>Stireman, John O.</au><au>Struebig, Matthew J.</au><au>Vasconcelos, Heraldo</au><au>Ziv, Yaron</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>FragSAD: A database of diversity and species abundance distributions from habitat fragments</atitle><jtitle>Ecology (Durham)</jtitle><addtitle>Ecology</addtitle><date>2019-12</date><risdate>2019</risdate><volume>100</volume><issue>12</issue><spage>1</spage><epage>1</epage><pages>1-1</pages><issn>0012-9658</issn><eissn>1939-9170</eissn><abstract>Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or consensus has been achieved, primarily because of non‐standardized sampling methodology and analyses of notoriously scale‐dependent response variables (i.e., species richness). To be able to compare and contrast the results of habitat fragmentation on species’ assemblages, it is necessary to have the underlying data on species abundances and sampling intensity, so that standardization can be achieved. To accomplish this, we systematically searched the literature for studies where abundances of species in assemblages (of any taxa) were sampled from many habitat patches that varied in size. From these, we extracted data from several studies, and contacted authors of studies where appropriate data were collected but not published, giving us 117 studies that compared species assemblages among habitat fragments that varied in area. Less than one‐half (41) of studies came from tropical forests of Central and South America, but there were many studies from temperate forests and grasslands from all continents except Antarctica. Fifty‐four of the studies were on invertebrates (mostly insects), but there were several studies on plants (15), birds (16), mammals (19), and reptiles and amphibians (13). We also collected qualitative information on the length of time since fragmentation. With data on total and relative abundances (and identities) of species, sampling effort, and affiliated meta‐data about the study sites, these data can be used to more definitively test hypotheses about the role of habitat fragmentation in altering patterns of biodiversity. There are no copyright restrictions. Please cite this data paper and the associated Dryad data set if the data are used in publications.</abstract><cop>United States</cop><pub>John Wiley and Sons, Inc</pub><pmid>31380568</pmid><doi>10.1002/ecy.2861</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-5580-4303</orcidid><orcidid>https://orcid.org/0000-0001-6689-3575</orcidid><orcidid>https://orcid.org/0000-0003-1914-5480</orcidid><orcidid>https://orcid.org/0000-0001-9017-7480</orcidid><orcidid>https://orcid.org/0000-0002-2304-1978</orcidid><orcidid>https://orcid.org/0000-0002-6025-5668</orcidid><orcidid>https://orcid.org/0000-0002-7941-8463</orcidid><orcidid>https://orcid.org/0000-0001-6969-7131</orcidid><orcidid>https://orcid.org/0000-0003-0863-5871</orcidid><orcidid>https://orcid.org/0000-0002-6139-220X</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0012-9658 |
ispartof | Ecology (Durham), 2019-12, Vol.100 (12), p.1-1 |
issn | 0012-9658 1939-9170 |
language | eng |
recordid | cdi_hal_primary_oai_HAL_hal_02624138v1 |
source | JSTOR Archival Journals and Primary Sources Collection; Wiley-Blackwell Read & Publish Collection |
subjects | Amphibians Anthropogenic factors Biodiversity Birds Data Papers Datasets Dependent variables disturbance Environmental degradation Environmental Sciences Fragmentation Fragments Grasslands Habitat fragmentation habitat loss Habitats Insects Invertebrates Life Sciences Qualitative analysis Reptiles Sampling species abundance distribution Species diversity Species richness species–area relationship Standardization Temperate forests Tropical forests |
title | FragSAD: A database of diversity and species abundance distributions from habitat fragments |
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