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FragSAD: A database of diversity and species abundance distributions from habitat fragments

Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or...

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Published in:Ecology (Durham) 2019-12, Vol.100 (12), p.1-1
Main Authors: Chase, Jonathan M., Liebergesell, Mario, Sagouis, Alban, May, Felix, Blowes, Shane A., Berg, Åke, Bernard, Enrico, Brosi, Berry J., Cadotte, Marc W., Cayuela, Luis, Chiarello, Adriano G., Cosson, Jean-Francois, Cresswell, Will, Dami, Filibus Danjuma, Dauber, Jens, Dickman, Chris R., Didham, Raphael K., Edwards, David P., Farneda, Fábio Z., Gavish, Yoni, Gonçalves-Souza, Thiago, Guadagnin, Demetrio Luis, Henry, Mickaël, López-Baucells, Adrià, Kappes, Heike, Nally, Ralph Mac, Manu, Shiiwua, Martensen, Alexandre Camargo, Mccollin, Duncan, Meyer, Christoph F. J., Neckel-Oliveira, Selvino, Nogueira, André, Pons, Jean-Marc, Raheem, Dinarzarde C., Ramos, Flavio Nunes, Rocha, Ricardo, Sam, Katerina, Slade, Eleanor, Stireman, John O., Struebig, Matthew J., Vasconcelos, Heraldo, Ziv, Yaron
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container_issue 12
container_start_page 1
container_title Ecology (Durham)
container_volume 100
creator Chase, Jonathan M.
Liebergesell, Mario
Sagouis, Alban
May, Felix
Blowes, Shane A.
Berg, Åke
Bernard, Enrico
Brosi, Berry J.
Cadotte, Marc W.
Cayuela, Luis
Chiarello, Adriano G.
Cosson, Jean-Francois
Cresswell, Will
Dami, Filibus Danjuma
Dauber, Jens
Dickman, Chris R.
Didham, Raphael K.
Edwards, David P.
Farneda, Fábio Z.
Gavish, Yoni
Gonçalves-Souza, Thiago
Guadagnin, Demetrio Luis
Henry, Mickaël
López-Baucells, Adrià
Kappes, Heike
Nally, Ralph Mac
Manu, Shiiwua
Martensen, Alexandre Camargo
Mccollin, Duncan
Meyer, Christoph F. J.
Neckel-Oliveira, Selvino
Nogueira, André
Pons, Jean-Marc
Raheem, Dinarzarde C.
Ramos, Flavio Nunes
Rocha, Ricardo
Sam, Katerina
Slade, Eleanor
Stireman, John O.
Struebig, Matthew J.
Vasconcelos, Heraldo
Ziv, Yaron
description Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or consensus has been achieved, primarily because of non‐standardized sampling methodology and analyses of notoriously scale‐dependent response variables (i.e., species richness). To be able to compare and contrast the results of habitat fragmentation on species’ assemblages, it is necessary to have the underlying data on species abundances and sampling intensity, so that standardization can be achieved. To accomplish this, we systematically searched the literature for studies where abundances of species in assemblages (of any taxa) were sampled from many habitat patches that varied in size. From these, we extracted data from several studies, and contacted authors of studies where appropriate data were collected but not published, giving us 117 studies that compared species assemblages among habitat fragments that varied in area. Less than one‐half (41) of studies came from tropical forests of Central and South America, but there were many studies from temperate forests and grasslands from all continents except Antarctica. Fifty‐four of the studies were on invertebrates (mostly insects), but there were several studies on plants (15), birds (16), mammals (19), and reptiles and amphibians (13). We also collected qualitative information on the length of time since fragmentation. With data on total and relative abundances (and identities) of species, sampling effort, and affiliated meta‐data about the study sites, these data can be used to more definitively test hypotheses about the role of habitat fragmentation in altering patterns of biodiversity. There are no copyright restrictions. Please cite this data paper and the associated Dryad data set if the data are used in publications.
doi_str_mv 10.1002/ecy.2861
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J. ; Neckel-Oliveira, Selvino ; Nogueira, André ; Pons, Jean-Marc ; Raheem, Dinarzarde C. ; Ramos, Flavio Nunes ; Rocha, Ricardo ; Sam, Katerina ; Slade, Eleanor ; Stireman, John O. ; Struebig, Matthew J. ; Vasconcelos, Heraldo ; Ziv, Yaron</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-h3931-a5f4a809875d920816605174eec74ee075978a3e18028851caa0677354341eb83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Amphibians</topic><topic>Anthropogenic factors</topic><topic>Biodiversity</topic><topic>Birds</topic><topic>Data Papers</topic><topic>Datasets</topic><topic>Dependent variables</topic><topic>disturbance</topic><topic>Environmental degradation</topic><topic>Environmental Sciences</topic><topic>Fragmentation</topic><topic>Fragments</topic><topic>Grasslands</topic><topic>Habitat fragmentation</topic><topic>habitat loss</topic><topic>Habitats</topic><topic>Insects</topic><topic>Invertebrates</topic><topic>Life Sciences</topic><topic>Qualitative analysis</topic><topic>Reptiles</topic><topic>Sampling</topic><topic>species abundance distribution</topic><topic>Species diversity</topic><topic>Species richness</topic><topic>species–area relationship</topic><topic>Standardization</topic><topic>Temperate forests</topic><topic>Tropical forests</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chase, Jonathan M.</creatorcontrib><creatorcontrib>Liebergesell, Mario</creatorcontrib><creatorcontrib>Sagouis, Alban</creatorcontrib><creatorcontrib>May, Felix</creatorcontrib><creatorcontrib>Blowes, Shane A.</creatorcontrib><creatorcontrib>Berg, Åke</creatorcontrib><creatorcontrib>Bernard, Enrico</creatorcontrib><creatorcontrib>Brosi, Berry J.</creatorcontrib><creatorcontrib>Cadotte, Marc W.</creatorcontrib><creatorcontrib>Cayuela, Luis</creatorcontrib><creatorcontrib>Chiarello, Adriano G.</creatorcontrib><creatorcontrib>Cosson, Jean-Francois</creatorcontrib><creatorcontrib>Cresswell, Will</creatorcontrib><creatorcontrib>Dami, Filibus Danjuma</creatorcontrib><creatorcontrib>Dauber, Jens</creatorcontrib><creatorcontrib>Dickman, Chris R.</creatorcontrib><creatorcontrib>Didham, Raphael K.</creatorcontrib><creatorcontrib>Edwards, David P.</creatorcontrib><creatorcontrib>Farneda, Fábio Z.</creatorcontrib><creatorcontrib>Gavish, Yoni</creatorcontrib><creatorcontrib>Gonçalves-Souza, Thiago</creatorcontrib><creatorcontrib>Guadagnin, Demetrio Luis</creatorcontrib><creatorcontrib>Henry, Mickaël</creatorcontrib><creatorcontrib>López-Baucells, Adrià</creatorcontrib><creatorcontrib>Kappes, Heike</creatorcontrib><creatorcontrib>Nally, Ralph Mac</creatorcontrib><creatorcontrib>Manu, Shiiwua</creatorcontrib><creatorcontrib>Martensen, Alexandre Camargo</creatorcontrib><creatorcontrib>Mccollin, Duncan</creatorcontrib><creatorcontrib>Meyer, Christoph F. 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J.</au><au>Neckel-Oliveira, Selvino</au><au>Nogueira, André</au><au>Pons, Jean-Marc</au><au>Raheem, Dinarzarde C.</au><au>Ramos, Flavio Nunes</au><au>Rocha, Ricardo</au><au>Sam, Katerina</au><au>Slade, Eleanor</au><au>Stireman, John O.</au><au>Struebig, Matthew J.</au><au>Vasconcelos, Heraldo</au><au>Ziv, Yaron</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>FragSAD: A database of diversity and species abundance distributions from habitat fragments</atitle><jtitle>Ecology (Durham)</jtitle><addtitle>Ecology</addtitle><date>2019-12</date><risdate>2019</risdate><volume>100</volume><issue>12</issue><spage>1</spage><epage>1</epage><pages>1-1</pages><issn>0012-9658</issn><eissn>1939-9170</eissn><abstract>Habitat destruction is the single greatest anthropogenic threat to biodiversity. Decades of research on this issue have led to the accumulation of hundreds of data sets comparing species assemblages in larger, intact, habitats to smaller, more fragmented, habitats. Despite this, little synthesis or consensus has been achieved, primarily because of non‐standardized sampling methodology and analyses of notoriously scale‐dependent response variables (i.e., species richness). To be able to compare and contrast the results of habitat fragmentation on species’ assemblages, it is necessary to have the underlying data on species abundances and sampling intensity, so that standardization can be achieved. To accomplish this, we systematically searched the literature for studies where abundances of species in assemblages (of any taxa) were sampled from many habitat patches that varied in size. From these, we extracted data from several studies, and contacted authors of studies where appropriate data were collected but not published, giving us 117 studies that compared species assemblages among habitat fragments that varied in area. Less than one‐half (41) of studies came from tropical forests of Central and South America, but there were many studies from temperate forests and grasslands from all continents except Antarctica. Fifty‐four of the studies were on invertebrates (mostly insects), but there were several studies on plants (15), birds (16), mammals (19), and reptiles and amphibians (13). We also collected qualitative information on the length of time since fragmentation. With data on total and relative abundances (and identities) of species, sampling effort, and affiliated meta‐data about the study sites, these data can be used to more definitively test hypotheses about the role of habitat fragmentation in altering patterns of biodiversity. There are no copyright restrictions. Please cite this data paper and the associated Dryad data set if the data are used in publications.</abstract><cop>United States</cop><pub>John Wiley and Sons, Inc</pub><pmid>31380568</pmid><doi>10.1002/ecy.2861</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0001-5580-4303</orcidid><orcidid>https://orcid.org/0000-0001-6689-3575</orcidid><orcidid>https://orcid.org/0000-0003-1914-5480</orcidid><orcidid>https://orcid.org/0000-0001-9017-7480</orcidid><orcidid>https://orcid.org/0000-0002-2304-1978</orcidid><orcidid>https://orcid.org/0000-0002-6025-5668</orcidid><orcidid>https://orcid.org/0000-0002-7941-8463</orcidid><orcidid>https://orcid.org/0000-0001-6969-7131</orcidid><orcidid>https://orcid.org/0000-0003-0863-5871</orcidid><orcidid>https://orcid.org/0000-0002-6139-220X</orcidid><oa>free_for_read</oa></addata></record>
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identifier ISSN: 0012-9658
ispartof Ecology (Durham), 2019-12, Vol.100 (12), p.1-1
issn 0012-9658
1939-9170
language eng
recordid cdi_hal_primary_oai_HAL_hal_02624138v1
source JSTOR Archival Journals and Primary Sources Collection; Wiley-Blackwell Read & Publish Collection
subjects Amphibians
Anthropogenic factors
Biodiversity
Birds
Data Papers
Datasets
Dependent variables
disturbance
Environmental degradation
Environmental Sciences
Fragmentation
Fragments
Grasslands
Habitat fragmentation
habitat loss
Habitats
Insects
Invertebrates
Life Sciences
Qualitative analysis
Reptiles
Sampling
species abundance distribution
Species diversity
Species richness
species–area relationship
Standardization
Temperate forests
Tropical forests
title FragSAD: A database of diversity and species abundance distributions from habitat fragments
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