quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation

quantiNemo is an individual-based, genetically explicit stochastic simulation program. It was developed to investigate the effects of selection, mutation, recombination and drift on quantitative traits with varying architectures in structured populations connected by migration and located in a heter...

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Published in:Bioinformatics 2008-07, Vol.24 (13), p.1552-1553
Main Authors: Neuenschwander, Samuel, Hospital, Frédéric, Guillaume, Frédéric, Goudet, Jérôme
Format: Article
Language:English
Subjects:
Algorithms
Animals
Biological and medical sciences
Chromosome Mapping - methods
Computer Simulation
Fundamental and applied biological sciences. Psychology
General aspects
Genetics, Population
Humans
Life Sciences
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Models, Genetic
Quantitative Trait Loci - genetics
Quantitative Trait, Heritable
Software
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container_end_page 1553
container_issue 13
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creator Neuenschwander, Samuel
Hospital, Frédéric
Guillaume, Frédéric
Goudet, Jérôme
description quantiNemo is an individual-based, genetically explicit stochastic simulation program. It was developed to investigate the effects of selection, mutation, recombination and drift on quantitative traits with varying architectures in structured populations connected by migration and located in a heterogeneous habitat. quantiNemo is highly flexible at various levels: population, selection, trait(s) architecture, genetic map for QTL and/or markers, environment, demography, mating system, etc. quantiNemo is coded in C++ using an object-oriented approach and runs on any computer platform. Availability: Executables for several platforms, user's manual, and source code are freely available under the GNU General Public License at http://www2.unil.ch/popgen/softwares/quantinemo Contact: samuel.neuenschwander@unil.ch
doi_str_mv 10.1093/bioinformatics/btn219
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subjects Algorithms
Animals
Biological and medical sciences
Chromosome Mapping - methods
Computer Simulation
Fundamental and applied biological sciences. Psychology
General aspects
Genetics, Population
Humans
Life Sciences
Mathematics in biology. Statistical analysis. Models. Metrology. Data processing in biology (general aspects)
Models, Genetic
Quantitative Trait Loci - genetics
Quantitative Trait, Heritable
Software
title quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation
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