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Fiducial markers detection trained exclusively on synthetic data for image-to-patient alignment in HMD-based surgical navigation
Surgical navigation guides surgeons during interventions. It provides them with spatial insights on where the anatomy and surgical instruments are in the patient space, and with respect to preoperative images. Image-to-patient alignment in this case is an important step which enables the visualizati...
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creator | Benmahdjoub, Mohamed Thabit, Abdullah Niessen, Wiro J. Wolvius, Eppo B. Van Walsum, Theo |
description | Surgical navigation guides surgeons during interventions. It provides them with spatial insights on where the anatomy and surgical instruments are in the patient space, and with respect to preoperative images. Image-to-patient alignment in this case is an important step which enables the visualization of preoperative images directly overlayed on the patient. Conventionally, image-to-patient alignment can be done with surface or point-based registration using anatomical or artificial landmarks. In case of point-based registration, surgeons use a trackable pointer to pinpoint some landmarks on the patient (fiducial markers placed preoperatively) and match them with their counterparts in the preoperative image. This method although accurate can be cumbersome and time-consuming. Direct detection of these landmarks in video may speed up the registration process, making it a first step towards AR navigation using head-mounted displays. Detection of objects, including such landmarks, is a task that can be performed with deep learning networks; however, the training of such networks requires large sets of annotated data, which are normally not available in clinical practice. In this study, we investigate the feasibility of using a deep learning model trained on synthetic images in detecting medical fiducial markers in real images, therefore bypassing the need for large sets of annotated patient data. To this end, we generate photorealistic synthetic images of subjects with landmarks using Unreal Engine and MetaHuman, train the detection model using these generated images and assess the model's capability of detecting the registration markers on real 2D images. Our experimental results demonstrate that the object detection model, although trained exclusively on synthetic data, is capable of detecting the markers on the HoloLens 2 video feed with a F1 score of 81%, which can be used for image-to-patient alignment. |
doi_str_mv | 10.1109/ISMAR-Adjunct60411.2023.00091 |
format | conference_proceeding |
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It provides them with spatial insights on where the anatomy and surgical instruments are in the patient space, and with respect to preoperative images. Image-to-patient alignment in this case is an important step which enables the visualization of preoperative images directly overlayed on the patient. Conventionally, image-to-patient alignment can be done with surface or point-based registration using anatomical or artificial landmarks. In case of point-based registration, surgeons use a trackable pointer to pinpoint some landmarks on the patient (fiducial markers placed preoperatively) and match them with their counterparts in the preoperative image. This method although accurate can be cumbersome and time-consuming. Direct detection of these landmarks in video may speed up the registration process, making it a first step towards AR navigation using head-mounted displays. Detection of objects, including such landmarks, is a task that can be performed with deep learning networks; however, the training of such networks requires large sets of annotated data, which are normally not available in clinical practice. In this study, we investigate the feasibility of using a deep learning model trained on synthetic images in detecting medical fiducial markers in real images, therefore bypassing the need for large sets of annotated patient data. To this end, we generate photorealistic synthetic images of subjects with landmarks using Unreal Engine and MetaHuman, train the detection model using these generated images and assess the model's capability of detecting the registration markers on real 2D images. Our experimental results demonstrate that the object detection model, although trained exclusively on synthetic data, is capable of detecting the markers on the HoloLens 2 video feed with a F1 score of 81%, which can be used for image-to-patient alignment.</description><identifier>EISSN: 2771-1110</identifier><identifier>EISBN: 9798350328912</identifier><identifier>DOI: 10.1109/ISMAR-Adjunct60411.2023.00091</identifier><identifier>CODEN: IEEPAD</identifier><language>eng</language><publisher>IEEE</publisher><subject>Alignment ; Augmented reality ; Data models ; Deep learning ; Navigation ; Navigation system ; Object detection ; Solid modeling ; Surgery ; Synthetic data ; Training</subject><ispartof>2023 IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct), 2023, p.429-434</ispartof><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://ieeexplore.ieee.org/document/10322147$$EHTML$$P50$$Gieee$$H</linktohtml><link.rule.ids>309,310,780,784,789,790,27925,54555,54932</link.rule.ids><linktorsrc>$$Uhttps://ieeexplore.ieee.org/document/10322147$$EView_record_in_IEEE$$FView_record_in_$$GIEEE</linktorsrc></links><search><creatorcontrib>Benmahdjoub, Mohamed</creatorcontrib><creatorcontrib>Thabit, Abdullah</creatorcontrib><creatorcontrib>Niessen, Wiro J.</creatorcontrib><creatorcontrib>Wolvius, Eppo B.</creatorcontrib><creatorcontrib>Van Walsum, Theo</creatorcontrib><title>Fiducial markers detection trained exclusively on synthetic data for image-to-patient alignment in HMD-based surgical navigation</title><title>2023 IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct)</title><addtitle>ISMAR-ADJUNCT</addtitle><description>Surgical navigation guides surgeons during interventions. It provides them with spatial insights on where the anatomy and surgical instruments are in the patient space, and with respect to preoperative images. Image-to-patient alignment in this case is an important step which enables the visualization of preoperative images directly overlayed on the patient. Conventionally, image-to-patient alignment can be done with surface or point-based registration using anatomical or artificial landmarks. In case of point-based registration, surgeons use a trackable pointer to pinpoint some landmarks on the patient (fiducial markers placed preoperatively) and match them with their counterparts in the preoperative image. This method although accurate can be cumbersome and time-consuming. Direct detection of these landmarks in video may speed up the registration process, making it a first step towards AR navigation using head-mounted displays. Detection of objects, including such landmarks, is a task that can be performed with deep learning networks; however, the training of such networks requires large sets of annotated data, which are normally not available in clinical practice. In this study, we investigate the feasibility of using a deep learning model trained on synthetic images in detecting medical fiducial markers in real images, therefore bypassing the need for large sets of annotated patient data. To this end, we generate photorealistic synthetic images of subjects with landmarks using Unreal Engine and MetaHuman, train the detection model using these generated images and assess the model's capability of detecting the registration markers on real 2D images. Our experimental results demonstrate that the object detection model, although trained exclusively on synthetic data, is capable of detecting the markers on the HoloLens 2 video feed with a F1 score of 81%, which can be used for image-to-patient alignment.</description><subject>Alignment</subject><subject>Augmented reality</subject><subject>Data models</subject><subject>Deep learning</subject><subject>Navigation</subject><subject>Navigation system</subject><subject>Object detection</subject><subject>Solid modeling</subject><subject>Surgery</subject><subject>Synthetic data</subject><subject>Training</subject><issn>2771-1110</issn><isbn>9798350328912</isbn><fulltext>true</fulltext><rsrctype>conference_proceeding</rsrctype><creationdate>2023</creationdate><recordtype>conference_proceeding</recordtype><sourceid>6IE</sourceid><recordid>eNotkM1PAjEQxauJiUT5Dzz04rHYj112eyQoQgIx8eNMhna6FpdCtl0iN_90S_Q0k5d5v_cyhNwLPhKC64fF22ryyiZ22weTxrwQYiS5VCPOuRYXZKgrXauSK1lrIS_JQFaVYCJbr8kwxm0-UzK7lBiQn5m3vfHQ0h10X9hFajGhSX4faOrAB7QUv03bR3_E9kSzHE8hfWLyhlpIQN2-o34HDbK0ZwdIHkOi0Pom7M6bD3S-emQbiJkU-67xJocFOPoGzim35MpBG3H4P2_Ix-zpfTpny5fnxXSyZF4InVhRqVqWhZG6ds4VY6VUoTeIHMHxQqlaCWkrZc1Y27IyZQ1OSXAgsy5KzdUNufvjekRcH7pcuTutRf6EFBn-CyuQZaU</recordid><startdate>20231016</startdate><enddate>20231016</enddate><creator>Benmahdjoub, Mohamed</creator><creator>Thabit, Abdullah</creator><creator>Niessen, Wiro J.</creator><creator>Wolvius, Eppo B.</creator><creator>Van Walsum, Theo</creator><general>IEEE</general><scope>6IE</scope><scope>6IL</scope><scope>CBEJK</scope><scope>RIE</scope><scope>RIL</scope></search><sort><creationdate>20231016</creationdate><title>Fiducial markers detection trained exclusively on synthetic data for image-to-patient alignment in HMD-based surgical navigation</title><author>Benmahdjoub, Mohamed ; Thabit, Abdullah ; Niessen, Wiro J. ; Wolvius, Eppo B. ; Van Walsum, Theo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-i119t-4738254c298fff4633349bee0eaf04338312d73dc69d57c58af32afa231215903</frbrgroupid><rsrctype>conference_proceedings</rsrctype><prefilter>conference_proceedings</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Alignment</topic><topic>Augmented reality</topic><topic>Data models</topic><topic>Deep learning</topic><topic>Navigation</topic><topic>Navigation system</topic><topic>Object detection</topic><topic>Solid modeling</topic><topic>Surgery</topic><topic>Synthetic data</topic><topic>Training</topic><toplevel>online_resources</toplevel><creatorcontrib>Benmahdjoub, Mohamed</creatorcontrib><creatorcontrib>Thabit, Abdullah</creatorcontrib><creatorcontrib>Niessen, Wiro J.</creatorcontrib><creatorcontrib>Wolvius, Eppo B.</creatorcontrib><creatorcontrib>Van Walsum, Theo</creatorcontrib><collection>IEEE Electronic Library (IEL) Conference Proceedings</collection><collection>IEEE Proceedings Order Plan All Online (POP All Online) 1998-present by volume</collection><collection>IEEE Xplore All Conference Proceedings</collection><collection>IEEE/IET Electronic Library</collection><collection>IEEE Proceedings Order Plans (POP All) 1998-Present</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Benmahdjoub, Mohamed</au><au>Thabit, Abdullah</au><au>Niessen, Wiro J.</au><au>Wolvius, Eppo B.</au><au>Van Walsum, Theo</au><format>book</format><genre>proceeding</genre><ristype>CONF</ristype><atitle>Fiducial markers detection trained exclusively on synthetic data for image-to-patient alignment in HMD-based surgical navigation</atitle><btitle>2023 IEEE International Symposium on Mixed and Augmented Reality Adjunct (ISMAR-Adjunct)</btitle><stitle>ISMAR-ADJUNCT</stitle><date>2023-10-16</date><risdate>2023</risdate><spage>429</spage><epage>434</epage><pages>429-434</pages><eissn>2771-1110</eissn><eisbn>9798350328912</eisbn><coden>IEEPAD</coden><abstract>Surgical navigation guides surgeons during interventions. It provides them with spatial insights on where the anatomy and surgical instruments are in the patient space, and with respect to preoperative images. Image-to-patient alignment in this case is an important step which enables the visualization of preoperative images directly overlayed on the patient. Conventionally, image-to-patient alignment can be done with surface or point-based registration using anatomical or artificial landmarks. In case of point-based registration, surgeons use a trackable pointer to pinpoint some landmarks on the patient (fiducial markers placed preoperatively) and match them with their counterparts in the preoperative image. This method although accurate can be cumbersome and time-consuming. Direct detection of these landmarks in video may speed up the registration process, making it a first step towards AR navigation using head-mounted displays. Detection of objects, including such landmarks, is a task that can be performed with deep learning networks; however, the training of such networks requires large sets of annotated data, which are normally not available in clinical practice. In this study, we investigate the feasibility of using a deep learning model trained on synthetic images in detecting medical fiducial markers in real images, therefore bypassing the need for large sets of annotated patient data. To this end, we generate photorealistic synthetic images of subjects with landmarks using Unreal Engine and MetaHuman, train the detection model using these generated images and assess the model's capability of detecting the registration markers on real 2D images. Our experimental results demonstrate that the object detection model, although trained exclusively on synthetic data, is capable of detecting the markers on the HoloLens 2 video feed with a F1 score of 81%, which can be used for image-to-patient alignment.</abstract><pub>IEEE</pub><doi>10.1109/ISMAR-Adjunct60411.2023.00091</doi><tpages>6</tpages></addata></record> |
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subjects | Alignment Augmented reality Data models Deep learning Navigation Navigation system Object detection Solid modeling Surgery Synthetic data Training |
title | Fiducial markers detection trained exclusively on synthetic data for image-to-patient alignment in HMD-based surgical navigation |
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