SUPERCONTIGS: a contig scaffolding tool

SUPERCONTIGS is a genome-finishing tool that orders, orients and groups contigs based on clone pair information and an alignment with a related genome. The program can be used in the genome finishing and gap closing process. SUPERCONTIGS is a Perl script that runs on Unix-like systems. It is availab...

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Bibliographic Details
Main Author: Puiu, D.
Format: Conference Proceeding
Language:English
Subjects:
Assembly
Bioinformatics
Biological cells
Cloning
Cryptography
Filters
Genomics
Libraries
Sequences
Visualization
Online Access:Request full text
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Description
Summary:SUPERCONTIGS is a genome-finishing tool that orders, orients and groups contigs based on clone pair information and an alignment with a related genome. The program can be used in the genome finishing and gap closing process. SUPERCONTIGS is a Perl script that runs on Unix-like systems. It is available at http://www.vcu.edu/csbc/bccl/research-downloads.htm as a copy-left public domain program.
DOI:10.1109/CSB.2004.1332563