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Cross-Population Train/Test Deep Learning Model: Abnormality Screening in Chest X-Rays
Automated radiological screening is an advancing field in which algorithms and predictive models are used to detect abnormalities in Chest X-rays (CXRs). Traditionally, in machine learning, the exact same dataset has been partitioned into train and test sets, and as a consequence, the validation sco...
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creator | Das, Dipayan Santosh, K.C. Pal, Umapada |
description | Automated radiological screening is an advancing field in which algorithms and predictive models are used to detect abnormalities in Chest X-rays (CXRs). Traditionally, in machine learning, the exact same dataset has been partitioned into train and test sets, and as a consequence, the validation scores are often biased towards the population it has been trained on. Cross-population test is a measure of how good an algorithm/model performs after training on a data from one region of the world and then evaluating the model on another data from another part of the world, without any additional training or learning on the latter data. To showcase cross-population train/test model, we consider two benchmark CXR (with Tuberculosis) datasets that are made available by the U.S. National Library of Medicine: a) Shenzhen, China; and b) Montgomery County, USA. We used a modified pre-trained deep learning model as our predictive model and achieved a cross-population classification accuracy of 76.05% (0.84, AUC) and 71.47% (0.79, AUC), using each dataset as training and testing data separately. To the best of our knowledge, this is the first cross-population evaluation of a deep learning model being used for abnormality screening using CXRs. |
doi_str_mv | 10.1109/CBMS49503.2020.00103 |
format | conference_proceeding |
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Traditionally, in machine learning, the exact same dataset has been partitioned into train and test sets, and as a consequence, the validation scores are often biased towards the population it has been trained on. Cross-population test is a measure of how good an algorithm/model performs after training on a data from one region of the world and then evaluating the model on another data from another part of the world, without any additional training or learning on the latter data. To showcase cross-population train/test model, we consider two benchmark CXR (with Tuberculosis) datasets that are made available by the U.S. National Library of Medicine: a) Shenzhen, China; and b) Montgomery County, USA. We used a modified pre-trained deep learning model as our predictive model and achieved a cross-population classification accuracy of 76.05% (0.84, AUC) and 71.47% (0.79, AUC), using each dataset as training and testing data separately. 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To the best of our knowledge, this is the first cross-population evaluation of a deep learning model being used for abnormality screening using CXRs.</description><subject>Chest X-rays</subject><subject>Cross-population train/test</subject><subject>Data models</subject><subject>Deep learning</subject><subject>Feature extraction</subject><subject>InceptionNet</subject><subject>Machine learning</subject><subject>Sociology</subject><subject>Solid modeling</subject><subject>Statistics</subject><subject>Training</subject><subject>Tuberculosis</subject><issn>2372-9198</issn><isbn>1728194296</isbn><isbn>9781728194295</isbn><fulltext>true</fulltext><rsrctype>conference_proceeding</rsrctype><creationdate>2020</creationdate><recordtype>conference_proceeding</recordtype><sourceid>6IE</sourceid><recordid>eNotjMtOwzAURA0SEm3hC2DhH0h7fZ34wa6E8pBagWhB7ConuQGjNInssOjfUx6rmaPRGcYuBUyFADvLr1fr1GYgpwgIUwAB8oiNhUYjbIpWHbMRSo2JFdacsnGMnwCZFFk2Yq956GJMnrr-q3GD71q-Cc63sw3Fgd8Q9XxJLrS-feerrqLmis-Ltgs71_hhz9dlIPodfcvzjx_nLXl2-3jGTmrXRDr_zwl7uV1s8vtk-Xj3kM-XiUeQQ1IpY1WRVljqymphpKwNSqUVqLJGi06jloeujKhsWhdgCoVAmaHygOTkhF38_Xoi2vbB71zYb60waHQqvwHZ11AQ</recordid><startdate>202007</startdate><enddate>202007</enddate><creator>Das, Dipayan</creator><creator>Santosh, K.C.</creator><creator>Pal, Umapada</creator><general>IEEE</general><scope>6IE</scope><scope>6IH</scope><scope>CBEJK</scope><scope>RIE</scope><scope>RIO</scope></search><sort><creationdate>202007</creationdate><title>Cross-Population Train/Test Deep Learning Model: Abnormality Screening in Chest X-Rays</title><author>Das, Dipayan ; Santosh, K.C. ; Pal, Umapada</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-i203t-d6896b4d2c7d971833f82367606cf292a727306c681d94fb08b620e58ec94fea3</frbrgroupid><rsrctype>conference_proceedings</rsrctype><prefilter>conference_proceedings</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Chest X-rays</topic><topic>Cross-population train/test</topic><topic>Data models</topic><topic>Deep learning</topic><topic>Feature extraction</topic><topic>InceptionNet</topic><topic>Machine learning</topic><topic>Sociology</topic><topic>Solid modeling</topic><topic>Statistics</topic><topic>Training</topic><topic>Tuberculosis</topic><toplevel>online_resources</toplevel><creatorcontrib>Das, Dipayan</creatorcontrib><creatorcontrib>Santosh, K.C.</creatorcontrib><creatorcontrib>Pal, Umapada</creatorcontrib><collection>IEEE Electronic Library (IEL) Conference Proceedings</collection><collection>IEEE Proceedings Order Plan (POP) 1998-present by volume</collection><collection>IEEE Xplore All Conference Proceedings</collection><collection>IEEE/IET Electronic Library</collection><collection>IEEE Proceedings Order Plans (POP) 1998-present</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Das, Dipayan</au><au>Santosh, K.C.</au><au>Pal, Umapada</au><format>book</format><genre>proceeding</genre><ristype>CONF</ristype><atitle>Cross-Population Train/Test Deep Learning Model: Abnormality Screening in Chest X-Rays</atitle><btitle>2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS)</btitle><stitle>CBMS</stitle><date>2020-07</date><risdate>2020</risdate><spage>514</spage><epage>519</epage><pages>514-519</pages><eissn>2372-9198</eissn><eisbn>1728194296</eisbn><eisbn>9781728194295</eisbn><coden>IEEPAD</coden><abstract>Automated radiological screening is an advancing field in which algorithms and predictive models are used to detect abnormalities in Chest X-rays (CXRs). Traditionally, in machine learning, the exact same dataset has been partitioned into train and test sets, and as a consequence, the validation scores are often biased towards the population it has been trained on. Cross-population test is a measure of how good an algorithm/model performs after training on a data from one region of the world and then evaluating the model on another data from another part of the world, without any additional training or learning on the latter data. To showcase cross-population train/test model, we consider two benchmark CXR (with Tuberculosis) datasets that are made available by the U.S. National Library of Medicine: a) Shenzhen, China; and b) Montgomery County, USA. We used a modified pre-trained deep learning model as our predictive model and achieved a cross-population classification accuracy of 76.05% (0.84, AUC) and 71.47% (0.79, AUC), using each dataset as training and testing data separately. 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subjects | Chest X-rays Cross-population train/test Data models Deep learning Feature extraction InceptionNet Machine learning Sociology Solid modeling Statistics Training Tuberculosis |
title | Cross-Population Train/Test Deep Learning Model: Abnormality Screening in Chest X-Rays |
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