Bioinformatics approach of three partial polyprenol reductase genes in Kandelia obovata

This present study describesthe bioinformatics approach to analyze three partial polyprenol reductase genes from mangrove plant, Kandeliaobovataas well aspredictedphysical and chemical properties, potential peptide, subcellular localization, and phylogenetic. The diversity was noted in the physical...

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Bibliographic Details
Published in:Journal of physics. Conference series 2018-03, Vol.978 (1), p.12044
Main Authors: Basyuni, M, Wati, R, Sagami, H, Oku, H, Baba, S
Format: Article
Language:English
Subjects:
Amino acids
Bioinformatics
Chemical properties
Chloroplasts
Genes
Homology
Localization
Mitochondria
Peptides
Phylogenetics
Physics
Reductases
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Summary:This present study describesthe bioinformatics approach to analyze three partial polyprenol reductase genes from mangrove plant, Kandeliaobovataas well aspredictedphysical and chemical properties, potential peptide, subcellular localization, and phylogenetic. The diversity was noted in the physical and chemical properties of three partial polyprenol reductase genes. The values of chloroplast were relatively high, showed that chloroplast transit peptide occurred in mangrove polyprenol reductase. The target peptide value of mitochondria varied from 0.088 to 0.198 indicated it was possible to be present. These results suggested the importance of understanding the diversity of physicochemical properties of the different amino acids in polyprenol reductase. The subcellular localization of two partial genes located in the plasma membrane. To confirm the homology among the polyprenol reductase in the database, a dendrogram was drawn. The phylogenetic tree depicts that there are three clusters, the partial genes of K. obovata joined the largest one: C23157 was close to Ricinus communis polyprenol reductase. Whereas, C23901 and C24171 were grouped with Ipomoea nil polyprenol reductase, suggested that these polyprenol reductase genes form distinct separation into tropical habitat plants.
ISSN:1742-6588
1742-6596
DOI:10.1088/1742-6596/978/1/012044