EUGÈNE'HOM: a generic similarity-based gene finder using multiple homologous sequences

EUGÈNE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGÈNE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon p...

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Bibliographic Details
Published in:Nucleic acids research 2003-07, Vol.31 (13), p.3742-3745
Main Authors: Foissac, Sylvain, Bardou, Philippe, Moisan, Annick, Cros, Marie-Josée, Schiex, Thomas
Format: Article
Language:English
Online Access:Get full text
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Summary:EUGÈNE'HOM is a gene prediction software for eukaryotic organisms based on comparative analysis. EUGÈNE'HOM is able to take into account multiple homologous sequences from more or less closely related organisms. It integrates the results of TBLASTX analysis, splice site and start codon prediction and a robust coding/non-coding probabilistic model which allows EUGÈNE'HOM to handle sequences from a variety of organisms. The current target of EUGÈNE'HOM is plant sequences. The EUGÈNE'HOM web site is available at http://genopole.toulouse.inra.fr/bioinfo/eugene/EuGeneHom/cgi-bin/EuGeneHom.pl.
ISSN:0305-1048
1362-4962
DOI:10.1093/nar/gkg586