Quantum mechanical calculations suggest that lytic polysaccharide monooxygenases use a copper-oxyl, oxygen-rebound mechanism

• Published in: Proceedings of the National Academy of Sciences - PNAS 2014-01, Vol.111 (1), p.149-154
• Main Authors: Kim, Seonah, Stahlber, Jerry, Sandgren, Mats, Paton, Robert S., Beckham, Gregg T.
• Format: Article
• Language: English
• Subjects: Active sites; Atoms; Biochemistry and Molecular Biology; Biofuels; Biokemi och molekylärbiologi; Biological Sciences; Biomass; Carbohydrates - chemistry; Carbon; Catalytic Domain; Cell Wall - metabolism; Computer Simulation; Copper; Copper - chemistry; Density; Enzyme Activation; Enzymes; Förnyelsebar bioenergi; Glycosides - chemistry; Hydrogen; Hydrogen - chemistry; Hydrolysis; Hydroxylation; Mixed Function Oxygenases - chemistry; Oxidation; Oxygen; Oxygen - chemistry; Oxygen - metabolism; Plants - metabolism; Polysaccharides; Polysaccharides - chemistry; Quantum Theory; Reaction mechanisms; Reactive Oxygen Species; Renewable Bioenergy Research; Structural Biology; Strukturbiologi; Thermoascus - enzymology
• ISSN: 0027-8424; 1091-6490; 1091-6490
• DOI: 10.1073/pnas.1316609111

Lytic polysaccharide monooxygenases (LPMOs) exhibit a mononuclear copper-containing active site and use dioxygen and a reducing agent to oxidatively cleave glycosidic linkages in polysaccharides. LPMOs represent a unique paradigm in carbohydrate turnover and exhibit synergy with hydrolytic enzymes in biomass depolymerization. To date, several features of copper binding to LPMOs have been elucidated, but the identity of the reactive oxygen species and the key steps in the oxidative mechanism have not been elucidated. Here, density functional theory calculations are used with an enzyme active site model to identify the reactive oxygen species and compare two hypothesized reaction pathways in LPMOs for hydrogen abstraction and polysaccharide hydroxylation; namely, a mechanism that employs a η ¹-superoxo intermediate, which abstracts a substrate hydrogen and a hydroperoxo species is responsible for substrate hydroxylation, and a mechanism wherein a copper-oxyl radical abstracts a hydrogen and subsequently hydroxylates the substrate via an oxygen-rebound mechanism. The results predict that oxygen binds end-on (η ¹) to copper, and that a copper-oxyl–mediated, oxygen-rebound mechanism is energetically preferred. The N-terminal histidine methylation is also examined, which is thought to modify the structure and reactivity of the enzyme. Density functional theory calculations suggest that this posttranslational modification has only a minor effect on the LPMO active site structure or reactivity for the examined steps. Overall, this study suggests the steps in the LPMO mechanism for oxidative cleavage of glycosidic bonds.